DreINT0022014 @ danRer10
Intron Retention
Gene
ENSDARG00000080019 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr1:19187260-19188456:+
Coord C1 exon
chr1:19187260-19187329
Coord A exon
chr1:19187330-19188384
Coord C2 exon
chr1:19188385-19188456
Length
1055 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
TTCTATTGAATCATTTATAGCAA
3' ss Score
4.93
Exon sequences
Seq C1 exon
GCATTTTGGTTTTGTTGTCAGCGCAGCTCGCCTTTTTGCTGGAATTTATAATATTCCATACTCAGAAGAG
Seq A exon
GTAAACAATGATTTACACAAACTGCTGTCTACTTGTGTGGTGCCTGAAAAAGTGCATGGTGTGCAATATTTATTGTCTACAGCAATATTATAATTGTTGCCTAAACAATGTGTGAGCTGAGATTTTTGTGTATGTTGTTTAATTTGCAGAAAACAAACTAAAAACACTCAAAAGTGTTCACTGCATGATACAGAATGTTAAAATGAGCCTGTACTGAACTCATAAATATCCCTTGGGTTTGGGTTTATGTTTTTTATATTTATAAAAGATGATATAGTAAAGTGTGGAGTTAGCATGTTCCCGTTGTGGGTTTCCTCCGAGTGCTCCGGTTTCCCCCATAAGTCCAAAGACATGTGCTATTGGTAATTTGGGAAGTCTAAATTGTCCATAGTGTATGTGTGTGAATGAGAGTGTATGGGTGTTTCCCAGTGATTGGTTGCAGCTGGAAGGGCATCCTCTGCATAAAACATATGCTGGATAAGTTGGCAGTTCATATCACTGTGGAACCCCTGATTAATAAAGGGACTAAGCTGAAAAGAAAATGAATGAATGAATGATGTAGTAGTAATATGACCCATGCAAGAGTGCCGCTATCTTGAAAATCAGTTTTTTAAATTTGATCTCAAATGTGATAATGATTTTAGAAAACAATTTTACAAAAAATTATTTTACATTTAGCTTAAAAGGTTGAAATGAATCTTGCTGTTCACTAACATTATGAGCAAATGATTCAGTGATACATTCATAGAGATGCTTATTTTCTGAATGAATCAGCCATTTTGAATGAATCATTTGAATTTATTCATTAAGACAGAATAAGAATTAAGCTCATTAATGCAGGGACTTGCTACTATATTGATATTTCTTGATCTGTTAGGCTTAAACCAGCCAAGAAACAATAGTATTTAAAAAAACTAATATTGTTTAACTTAATAATTTAAACTCAACAAATAATCCAGATAATTTTCAATATTGCACACTCCTACTTTTTGAAGTAATTGTTTGTAAAGTTTTGTTGCTATTTGTCTTATAATGTTCTATTGAATCATTTATAG
Seq C2 exon
CAACTTTCCTACGAGGATGTCTCCAGAGTTTTAGCTGAAGTGGATGTTCCTGAATACAAACCAGCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000080019:ENSDART00000111454:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(43.4=100)
A:
NA
C2:
PF0213416=UBACT=PD(39.6=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]