BtaINT0155995 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:51000043-51000301:+
Coord C1 exon
chr22:51000043-51000135
Coord A exon
chr22:51000136-51000200
Coord C2 exon
chr22:51000201-51000301
Length
65 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
CCTGACCCATATCTCTCTAGGAG
3' ss Score
9.21
Exon sequences
Seq C1 exon
TTCCATCACCTGAAGTGGACCTGCTGGGACCGCCTGGAAGTGCCTGCTGGGCAGCCTGAGAGGACCCTGGAGTCGTTGCTGGCCCACATCCAG
Seq A exon
GTGTGCCCCAGTTCTGCCCTGCTCCCAGGCCTGTTCCCGCTGGCCCCTGACCCATATCTCTCTAG
Seq C2 exon
GAGCTACAAGGACTGAGGGTGACGATGCTCCTGCACGGGTCGGCCCTGCTCTACTCAGCAGGATGGTCTGAGGAAAAACAGACCCAGCACCTGTCCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335:ENSBTAT00000016365:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(24.6=100)
A:
NA
C2:
PF093585=UBA_e1_C=FE(27.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGAAGTGGACCTGCTG
R:
GGTGCTGGGTCTGTTTTTCCT
Band lengths:
178-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]