HsaINT0176115 @ hg38
Intron Retention
Gene
ENSG00000182179 | UBA7
Description
ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr3:49805897-49806165:-
Coord C1 exon
chr3:49806073-49806165
Coord A exon
chr3:49805998-49806072
Coord C2 exon
chr3:49805897-49805997
Length
75 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
GTCTGACCTTTCTCCTCTAGGAG
3' ss Score
11.19
Exon sequences
Seq C1 exon
TTCCATCACCTGAAGTGGACCTCTTGGGACCGTCTGAAGGTACCAGCTGGGCAGCCTGAGAGGACCCTGGAGTCGCTGCTGGCTCATCTTCAG
Seq A exon
GTGTGCCCTGTTGCTACCCCAACCCCCAGGCTCAGCCCAGCCCGGCCCAGCTGGTGTCTGACCTTTCTCCTCTAG
Seq C2 exon
GAGCAGCACGGGTTGAGGGTGAGGATCCTGCTGCACGGCTCAGCCCTGCTCTATGCGGCCGGATGGTCACCTGAAAAGCAGGCCCAGCACCTGCCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179:ENST00000333486:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(23.4=100)
A:
NA
C2:
PF093585=UBA_e1_C=FE(25.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGAAGTGGACCTCTTGG
R:
TGCTTTTCAGGTGACCATCCG
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains