RnoINT0159035 @ rn6
Intron Retention
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116762031-116762297:+
Coord C1 exon
chr8:116762031-116762123
Coord A exon
chr8:116762124-116762196
Coord C2 exon
chr8:116762197-116762297
Length
73 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
ATCTGATGTCTGTCTTCTAGGAA
3' ss Score
10.71
Exon sequences
Seq C1 exon
TTCCATCACCTGGAATGGACCTGTTGGCACCGCCTGACGGTGCCTGCTGGGCAGCCTGAGAGGACACTGGAATCCCTGCTGGCCCATCTCCAG
Seq A exon
GTATGCCCTGTCTCCACTCCGTCCCTGGCCCAGCCTAGCCTTGCCCAGTGGGTATCTGATGTCTGTCTTCTAG
Seq C2 exon
GAAGAGCATGGACTGACGGTGAGGATGCTGCTGCATGACCAGGCTCTGCTCTATTCTTCAGGATGGCCATTTGAAAAGCAGGCTCAGCACTTGGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195:ENSRNOT00000068295:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(23.4=100)
A:
NA
C2:
PF093585=UBA_e1_C=FE(25.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGAATGGACCTGTTGG
R:
AGTGCTGAGCCTGCTTTTCAA
Band lengths:
178-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]