BtaINT0155996 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:51000201-51000966:+
Coord C1 exon
chr22:51000201-51000301
Coord A exon
chr22:51000302-51000757
Coord C2 exon
chr22:51000758-51000966
Length
456 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTCCCCCCACACCACCAGGGT
3' ss Score
6.65
Exon sequences
Seq C1 exon
GAGCTACAAGGACTGAGGGTGACGATGCTCCTGCACGGGTCGGCCCTGCTCTACTCAGCAGGATGGTCTGAGGAAAAACAGACCCAGCACCTGTCCCGCAG
Seq A exon
GTGAGCCCACACCTGGCTTTAACAAGGCCCTGGAGGTTGGAGGTGAGGGATGTGCAGCTTCTCCTCTTCCCAACCCCATTTGGGCCCCTCACACCTTCCTGAAGTTTTCTTTTGCCAAATGGAGCCAGCAAACGGGCTGGGGGTGGGGGGAGGGCCAGGAGCCCTCTAGGAGGGGCCTCTAGGAGCTGCCTGCTTGGCCAGCCCCACCAGCTCCTCCACACCCTCCTCAGCTCCCCTTTCACGGCCCACTCCCAGGGGACTCACAGCTTCCTGCCTCCTGCTCGCCCCGCCAGCCGCTCCTAAAATAGTTTTCAGATGTTTCCTGTCTTGGGCTGCTCCTGCTCCTGGCTTGGGCTCCTTATGGCCCCCAGCACCCTGGAGCCCATGCCAGGACACTCTCTGCCTGTTACCGCTCACCTACCCAATCTCCCCACCCCTCTCCCCCCACACCACCAG
Seq C2 exon
GGTGACAGATCTGGTGAAGAAGGTGCCTGGGCAGCGGGTGCTGGTATTGGAACTTGGCTACGAGGGTGAGGAGGATGACACTAACTTTCCACGCTTGCACTACAAGCTGTGACAAGGCAGCAGCCCCACCACCCAGCTCCATCAGGCCCTGCGTCCCGAGCCCTGCATCCCAAGCCCACAGCAGACACTCAATAAATACTTGTTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335:ENSBTAT00000016365:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(27.0=100)
A:
NA
C2:
PF093585=UBA_e1_C=PD(26.2=84.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTACAAGGACTGAGGGTGA
R:
AAGTATTTATTGAGTGTCTGCTGTGG
Band lengths:
302-758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]