HsaINT0176116 @ hg19
Intron Retention
Gene
ENSG00000182179 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:12471]
Coordinates
chr3:49842638-49843430:-
Coord C1 exon
chr3:49843330-49843430
Coord A exon
chr3:49842871-49843329
Coord C2 exon
chr3:49842638-49842870
Length
459 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTAAACCCACCCCTACCAGGGT
3' ss Score
3.77
Exon sequences
Seq C1 exon
GAGCAGCACGGGTTGAGGGTGAGGATCCTGCTGCACGGCTCAGCCCTGCTCTATGCGGCCGGATGGTCACCTGAAAAGCAGGCCCAGCACCTGCCCCTCAG
Seq A exon
GTGAGCCCACTTGGGGCTTTAGACAGGCCCCACCAGTCCCTGGAGGCTGGGGCTAGGGACCACACTGCCTTTTGTCTTCCCAGCCCCATTCTGGGCCCCTCACACCTTCCCAAGCATTCTTTCCCCAAATGGAGCCAGCAAACAGGCTGGAGGTGGGGTGAGGGCCGAGAGCCTGAGGAGGAGTCTTCAGGAGCTGCCTATTTGGCCAGCCCCATGGGCTCCCCACATGCTGCACAGCCCCCCTTTCACAGCCCACTCCCAAGGGACCCATAGCTTCCTGCCTCCTGCTTGCCTCATCAGCTGCTCCTAAAATAGTTTCAGATGTTTCCTGTCTTGAGCAGCTCCTGCTCCTGGCTTGGGCTCCTGACGGCCTGCCAGCACCCTCTCTAGTCCATGCCAGGCTGCCTTCTGCTTGCCATGGCTCACCTCTCCAATCTCCCCTAAACCCACCCCTACCAG
Seq C2 exon
GGTGACAGAACTGGTTCAGCAGCTGACAGGCCAGGCACCTGCTCCTGGGCAGCGGGTGTTGGTGCTAGAGCTGAGCTGTGAGGGTGACGACGAGGACACTGCCTTCCCACCTCTGCACTATGAGCTGTGACAAGGCAGCCACCCTGTCACCTAGCTCAATGGAGCCCCGGATCCCAAGCCCTGCATTGTAAGCCCACAGTAGGCACTCAATAAATGCTTGTTAAAGGAAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179-UBA7:NM_003335:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(25.8=100)
A:
NA
C2:
PF093585=UBA_e1_C=PD(29.7=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGCACGGGTTGAGG
R:
TGCCTTCCTTTAACAAGCATTT
Band lengths:
334-793
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)