DreINT0170309 @ danRer10
Intron Retention
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20737035-20738278:+
Coord C1 exon
chr23:20737035-20737135
Coord A exon
chr23:20737136-20737248
Coord C2 exon
chr23:20737249-20738278
Length
113 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
CGTTTAATTTCTTTCAACAGGAT
3' ss Score
10.98
Exon sequences
Seq C1 exon
AATGAACACAAACTGGAGATCACGATGCTCTCTCAGGGAGTTTCTATGCTCTACTCTTTCTTCATGCCTGCAGCCAAACTCAAAGAAAGACTGGAACTACC
Seq A exon
GTGAGTTATTTTTACCCAATCACAACCTTAGAAAAGCACTGAATTGTAATGCTATAGGCAGAAGTGATGCAAAAAGAATAAAAGAATATTCAACGTTTAATTTCTTTCAACAG
Seq C2 exon
GATGACTGAGATCGTGACCAAAGTGTCCAAGAAGAAACTGGGCAAGCATGTCAAAGCACTAGTGTTTGAGCTCTGCTGCAATGACGACACAGAAGAAGACGTAGAGGTGCCCTATGTCAGATACACCATCCGCTGACAGGGCTGATGGGTAGGACAGGGGACAGACTAGAGGAGGGAGAGGGCGGCCCACTGGGGATGGGAGTGCATCAGTATGCTTGGAGAGCCCAAATCAAATCAATTGGTTTTATTTTAACCTGATGCTCAAGTATTATCTATCAATAACCTCTTTTACCCTGCCGGTCGAGCTCTTTAAGGTCTAATTCAGTCAGGTTGGTCATGTTCAGGAAATGGGGAGCATGTGAAGTTTTGGCTGTAACTTATTTAAGCTGGTTTTTGTAACGCACAGCATCAGTGTGTGAATTTTATCATCACTCCCTTTCTGTGAATCCTCTTTCTCACACCGGTCCTCATGTGGGCAGCACCATCTTGATTTGTTTTCCTGAATAAAATATTGACTGATGCCAAAAAAAAATGAGTACAAATGGAAAAGATGTCAATGATGTTTGCTTAAATAGATTTTTCAAATCATCGCCTTGGCTTGATGTCACCTTAAATGTAACTTGAAATGCGCTCTTATTGGCCAAGGTTTTGGAGCAACGTACTGAACTCCTGTTCTCCCATTGGCCCAGTGGGAACCTCCCTTTGCCTCTCTGGCTTCTGTATGGGGTGGGTACAGGAACTTGCACATAACTTTTTGTTTTGTTTTTCCCTCATTTTTTTATTTTTATTTTTTTGGCAGAATTCTGGTGTACACCTTGTAGAACATAACCTCTGTATTCTTTCTACTTTGTTAAACTCCAAAAAAAGACATTACAGTCTAAAACACATGATTTTACTCTGTAATGGGAGCACTTAGTGTGTTAGTGAATAAAGTTGGAAACGTTTTCTTTGCTTTATTGTCTCCTCTTTGCTATTGTTGTTTTTAAGATGTGTCTAAACAGTTAATAAAAACAGTCTTAGGTCAATCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559:ENSDART00000054691:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(25.0=100)
A:
NA
C2:
PF093585=UBA_e1_C=PD(29.5=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGATGCTCTCTCAGGGAG
R:
GTCCCCTGTCCTACCCATCAG
Band lengths:
244-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]