MmuINT0168782 @ mm9
Intron Retention
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20259235-20259830:+
Coord C1 exon
chrX:20259235-20259335
Coord A exon
chrX:20259336-20259503
Coord C2 exon
chrX:20259504-20259830
Length
168 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
ACCCTCACCCCTTTCCCTAGGAT
3' ss Score
10.03
Exon sequences
Seq C1 exon
ACAGAGCACAAATTGGAGATCACCATGCTGTCCCAGGGCGTGTCCATGCTCTATTCTTTCTTCATGCCAGCTGCTAAGCTCAAGGAACGATTGGATCAGCC
Seq A exon
GTGAGTAGGCTATTGCCAGGCAGGCTGGGAAGGGCCCTGTGTTGGGTGGGGAGCCTCAGCTTTTGAAGCTTTCACTCCTACCCATCACCTCCCCCGCCCTCACCTACCTCCCCTTCCTCTTGCTTTGCCTCCTTGGCCCTCTTCCCTTACCCTCACCCCTTTCCCTAG
Seq C2 exon
GATGACAGAGATTGTGAGCCGAGTGTCAAAGAGAAAGCTGGGCCGCCATGTGCGGGCACTGGTGCTTGAGCTGTGCTGCAACGATGAAAGCGGCGAGGACGTCGAGGTCCCTTATGTCCGATATACCATTCGCTGATCTCCGTGCATTCCCCTAAGCCCCAGTCCTCCCTCCTCAGATCCTTTCCAATCCTGGTTTCCATTTGGCCTCAGGCAGTGGTCCATGTAGCCAAGCCTGGCCTTCCCTATTACCCAGCAACCTCAAGACCCTCTCACCGCTGCTTTGTACCTTGTTTGGAACCTAAATCCCAATAAAAGGATAATTACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924-Uba1:NM_001136085:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(25.0=100)
A:
NA
C2:
PF093585=UBA_e1_C=PD(29.5=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGTGTCCATGCTCTATTC
R:
AGGATCTGAGGAGGGAGGACT
Band lengths:
247-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: