BtaINT0155893 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90849801-90850346:+
Coord C1 exon
chrX:90849801-90849901
Coord A exon
chrX:90849902-90850021
Coord C2 exon
chrX:90850022-90850346
Length
120 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CTCTGCTCCCTTGTCCCCAGGAT
3' ss Score
10.96
Exon sequences
Seq C1 exon
ACAGAACATAAGTTGGAGATCACTATGCTGTCCCAGGGCGTGTCTATGCTCTACTCTTTCTTCATGCCAGCCGCCAAGCTCAAGGAACGATTGGATCAGCC
Seq A exon
GTGAGTTGGGTGGTGGGGAGCCTCAACTTGCAGCTGTCCCACTGCTGCTCACTGCCCCCAGCTACCTGCCTCTTCTCACTTACCTTTTGCCTTCCTGACCCTCTGCTCCCTTGTCCCCAG
Seq C2 exon
GATGACCGAGATTGTAAGCCGTGTGTCGAAACGAAAGCTTGGCCGCCATGTGCGAGCACTGGTGCTTGAGCTGTGCTGTAACGATGAGAGCGGCGAGGATGTTGAGGTCCCCTATGTACGATACACCATCCGCTGATCCGTGTCCTCTCCTGTAGACTGACCCCAGATCCCCTCTCCAGATCCCTTCCATCCCAGGGCTCCCATTTGACCTCTGGCAGTGGCCCAGCTAGCCAGGCTTGGTGTTCTCATCCCCCTACCTGAACTCCTCTTGCCGCTGCTTTCTACCTTGTTCGGAACCTGACTCCTAATAAAGAATTGTTAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(25.0=100)
A:
NA
C2:
PF093585=UBA_e1_C=PD(29.5=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTTTCTTCATGCCAGCCG
R:
TGGGATGGAAGGGATCTGGAG
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]