RnoINT0158935 @ rn6
Intron Retention
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1723174-1723766:-
Coord C1 exon
chrX:1723666-1723766
Coord A exon
chrX:1723503-1723665
Coord C2 exon
chrX:1723174-1723502
Length
163 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
ACCCTCACCCCTTTCCCTAGGAT
3' ss Score
10.03
Exon sequences
Seq C1 exon
ACGGAGCACAAATTAGAGATCACCATGCTGTCCCAGGGTGTGTCCATGCTCTATTCTTTCTTCATGCCAGCTGCTAAGCTCAAGGAACGGTTGGATCAGCC
Seq A exon
GTGAGTAGCCTACTGCCAGGCAGGCTGGGAAAGGCCCTGTGTTCCTTGTGTTGGGTGGGGAGCCTCTCAGCTTTTGAAGCTTTTCCTCTCCTGCCCTCACCTACCTCCCCTTCCTCTATTGTCTTCCTGGCTCACTTCCCTTAACCCTCACCCCTTTCCCTAG
Seq C2 exon
GATGACAGAGATTGTGAGCCGAGTGTCAAAGAGAAAGCTGGGCCGCCATGTGCGTGCACTGGTGCTTGAGCTGTGCTGCAACGATGAAAGTGGCGAGGACGTCGAGGTCCCCTATGTACGATATACAATTCGCTGATCTCCATGAATTCCCCTAAGCCCTAGTCCCCCTACCCCCCAGATCCTTTCCAGTCCTGGTTTCCATTTGGCCTCAGGCAGTGGTCCATCTAGCCAAGCCTGGACTTCCCTTATCACCCAGCAACCTCAAGATCCTCTCACCACTGCTTTGTACCTTGTTTGGAACCTAAATCCCAATAAAAAAAAGATAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164:ENSRNOT00000031115:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(25.0=100)
A:
NA
C2:
PF093585=UBA_e1_C=PD(29.5=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGGAACGGTTGGATCAGC
R:
TAGATGGACCACTGCCTGAGG
Band lengths:
249-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]