MmuINT0168886 @ mm10
Intron Retention
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107983263-107984056:+
Coord C1 exon
chr9:107983263-107983363
Coord A exon
chr9:107983364-107983816
Coord C2 exon
chr9:107983817-107984056
Length
453 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TAAACCCCCTCCCATACCAGGGT
3' ss Score
7.07
Exon sequences
Seq C1 exon
GAAGAACATGGACTGAAGGTGGAGATGCTTCTCCACCACCAGGCTCTGCTCTATTCTTCAGGATGGTCATCTGAAAAGCAGGCTCAACACCTGTGCCTCAG
Seq A exon
GTGAGCCGGTCGTAGCCAGGCTCTACCATGTCCCTGGAGGTTGAGCATGGGTGACAAGGTCTTTTTCTCCACCCCATTTTAGGCCCCTCACACCTTCTTGAAGCATTCTTCCACCAAATGGAGCCAACAAATGGGCCTGGGAGGGGGTGGAGCTAAGGGCCAGAGGAAGGGGACTTCAGTAGCTGTCTGCTTGGCCAGCCCCCTTGGCTTCCCATACCCTGCCCAGCCCCCATCTCCCTTCACAGCCTGCTCTCGAGGGACAAACAGCTTCCTGCCTCTTGCCTGCCCCACCAGCTGCTCCTAAAATAGTTTCAGATGTTTCCTGCCTTGGGCCGCTCCTGCTCCTGGTTGGGGCTCTTGAGGGCTCACCAGCACCCTCTTGTCCACACTAGGTTGCCCTCTGTCTGCCTTGACCCACCTACAGAGTCTCCCCTAAACCCCCTCCCATACCAG
Seq C2 exon
GGTGACAGAACTGGTTCAGCACGTGACCGGCTGGAAGCCCAAGCCTGGGCTGAAGGTTCTGGTGTTTGAGCTGAGCTGTGAGGGCGAGGAGGAAGAAATGGCCTTCCCACCTCTGCATTATGAGCTGTGACGAGGTAGCCACACCACGCCACCACTTGGCCATAACAAACTCTGCATAAAATTCCTACATCTTCAGCTCACAGCAGATACTTCAACAATAAAAACTTGTTGACGGAAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596:ENSMUST00000035216:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093585=UBA_e1_C=FE(25.8=100)
A:
NA
C2:
PF093585=UBA_e1_C=PD(29.7=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGACTGAAGGTGGAGATGC
R:
GCCTTCCGTCAACAAGTTTTT
Band lengths:
335-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types