BtaINT0155999 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50993071-50993387:+
Coord C1 exon
chr22:50993071-50993161
Coord A exon
chr22:50993162-50993251
Coord C2 exon
chr22:50993252-50993387
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CAGGCCGCCTCTCATCACAGGGC
3' ss Score
6.59
Exon sequences
Seq C1 exon
GCAGTTGTTCTGTGACTTTGGTGAGAACTTCACTGTGCAGGACCCCACAGAGGCAGAACCCCTGACGGCCAACATCCAGCATATCTCCCAG
Seq A exon
GTGGGTGCTGGGGTAGGGGGCACTACCCCTACTGAGGATCCTGTGAAAGGCAGGGCTAGGCCCCCCTGAGCAGGCCGCCTCTCATCACAG
Seq C2 exon
GGCTCCCCTGGCATTCTCACTCTGAGAGAAGAGGCTGGTACCCACCACTTCCACACAGGGGATTGGGTGACTTTCTCAGGCATTGAGGGCATGGTGGAGCTCAACGGCTGTGATCCTCGGCCTCTCCATGTGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335:ENSBTAT00000016365:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PD(4.5=19.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTCACTGTGCAGGACCC
R:
GATCACAGCCGTTGAGCTCC
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]