RnoINT0159039 @ rn6
Intron Retention
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116755369-116755698:+
Coord C1 exon
chr8:116755369-116755459
Coord A exon
chr8:116755460-116755562
Coord C2 exon
chr8:116755563-116755698
Length
103 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ACAAGGCATCTTTCACTCAGGGC
3' ss Score
4.41
Exon sequences
Seq C1 exon
GCGGTTATTCTGTGATTTTGGTGAGGACTTCACTGTTGTGGACCCTACAGAGGTGGAGCCCACGTCAGCTGCCATCCAGGACATCTCTCAG
Seq A exon
GTGGGTGATAAGATGTAGAGGTTTCCCTGATGCCCAGAGAAAGGTGCCAGGGCTTGTGGAAGGTAGATACAGGCACTCTGAAGACAAGGCATCTTTCACTCAG
Seq C2 exon
GGCTCCCCCGGCATTGTCACTCTGAGAGGAGGCAGCAAAAGACCTTCCTTTTATGATGGGGACTTGGTGATGTTCTCAGACATTGAAGGCATGGTTGAACTCAACAGTCATTCTCCACAGCCTGTCCGTGTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195:ENSRNOT00000068295:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.239
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PD(4.5=19.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTTATTCTGTGATTTTGGTGA
R:
CTGCACACGGACAGGCTG
Band lengths:
226-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]