HsaINT0176119 @ hg38
Intron Retention
Gene
ENSG00000182179 | UBA7
Description
ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr3:49812408-49812738:-
Coord C1 exon
chr3:49812648-49812738
Coord A exon
chr3:49812544-49812647
Coord C2 exon
chr3:49812408-49812543
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCAAGCCTCCTCCTACCCAGGGC
3' ss Score
4.77
Exon sequences
Seq C1 exon
GCAGTTGTTCTGTGACTTTGGTGAGGACTTCACTGTGCAGGACCCCACAGAGGCAGAACCCCTGACAGCTGCCATCCAGCACATCTCCCAG
Seq A exon
GTGGGTGCTGAGCTGTAGGCATTCACCTGCTGACCAAGGAGAGGCTGCCAGGGCCTGTGGAAGGCAGGTCCAGGCAACCCTGAGCCAAGCCTCCTCCTACCCAG
Seq C2 exon
GGCTCCCCTGGCATTCTCACTCTGAGGAAAGGGGCCAATACCCACTACTTCCGTGATGGAGACTTGGTGACTTTCTCGGGAATTGAGGGAATGGTTGAGCTCAACGACTGTGATCCCCGGTCTATCCACGTGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179:ENST00000333486:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PD(4.5=19.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGTTCTGTGACTTTGGTG
R:
CCGCACGTGGATAGACCG
Band lengths:
226-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains