BtaINT0157542 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014897 | UNC5A
Description
unc-5 homolog A (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr7:39690672-39691071:+
Coord C1 exon
chr7:39690672-39690821
Coord A exon
chr7:39690822-39690906
Coord C2 exon
chr7:39690907-39691071
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTAACCCCCCTGCCCCCAGGAG
3' ss Score
9.78
Exon sequences
Seq C1 exon
GAGGTGGTACAGCTGGAGAAACAACTGGGAGGACAGCTGATCCAGGAGCCCCGCGTCCTGCACTTCAAGGATAGCTACCACAACCTGCGCTTGTCCATCCACGATGTGCCCAGCTCCCTGTGGAAGAGCAAGCTCCTCGTCAGCTACCAG
Seq A exon
GTGAGGACACTCGGGGTGCTGGGAGCCAGGCTCGCCCAAGCCCGGCTCCCCTGACACCACCTCTCTGTAACCCCCCTGCCCCCAG
Seq C2 exon
GAGATCCCCTTTTATCACATCTGGAATGGCACACAGCAGTACCTGCACTGCACTTTCACCCTGGAGCGTGTCAGCCCCAGCACCAGCGACCTGGCCTGCAAGGTGTGGGTGTGGCAGGTGGAGGGCGATGGGCAGAGCTTCAATGTCAACTTCAACATCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014897:ENSBTAT00000043831:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTGGGAGGACAGCTGAT
R:
CTGCTGTGTGCCATTCCAGAT
Band lengths:
169-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]