DreINT0171857 @ danRer10
Intron Retention
Gene
ENSDARG00000033327 | unc5b
Description
unc-5 homolog B (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041213-1]
Coordinates
chr13:29086542-29089657:+
Coord C1 exon
chr13:29086542-29086691
Coord A exon
chr13:29086692-29089492
Coord C2 exon
chr13:29089493-29089657
Length
2801 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTGTTTATTGTGTATTCCAGGAA
3' ss Score
10.49
Exon sequences
Seq C1 exon
GAAGTATTAGAGGTTGAGAGAAGTCTGGGTGGGGTTTTACTGGAGGATCCCAAACCTTTGCTTTTTAAGGACAGTTACCACAATATGCGGCTGTCGATCCATGACATCCCTCATTCACACTGGAGGAGCAAACTCCTGGCTAAGTATCAG
Seq A exon
GTGAGAGACTTTATGCTGTTGTTGGTCATATGGTTATCCTTTTTTTAGTTAATTAACTTTTTATAATAAAGAATCAACAAAAATATTAACTTTCTCATTCTGTCACTTTTAAAAATACCTCTGTTTTCAAATCCCACTATTTTAAAATCTTACTTCCTGTCTAGTGATTTTCCCAGTAGATAAAATATTAAGTCCCACCCAACCTTTTCTTATTGAATATATCATAGCATATCATATCATATAATTTTATAGAATGTTTTGTTATGATTAGATTACGATGTGAGAACTTGTAAATTACATTTAATGTTGTGTTTAATTTTCAGGTTGAGATTTTTATTATTATACTTTAAATGAAAAATAAAGATGAAGGGAAGCAAATTAGTTTAAAGATGCTGTATGTAAGTTTTTGACTCTTCTAAAGCATAAAAATAGCATTATGCGTTTGCAGATATTTAAGAAACATGCCAAAAGGAACATTCTTGTTTATCTGAAAAACAATGCTGAAGTCAGATGTTCTGCTTTGAAAATGTCTGTTACGTGCTGGAATGGCTGTCTTTGTTTTCATTCTATTAATGCATTAATTTCAATTCCAGTTTAGCCAATTATATTTCAGCACTCCGTATTGCCTTGGTGAAAAACTGTGTATTTCATTCATTCATTTAGAAAGGCTCCCAAAGTATGCGCCCATGATCGAAACGTGACCTCCGGTGGTTTGCATTATTTCTACAGTTCTAAAGTTCCATTTCAAATGTTTTTTTTTGTTTTTGTTTTTTTTTTCAAAATCTGTGGTGAACTATCTGCTGCTGCTTTTAGTTGTATGGCAACAAGTAATTCAGCTGCAAAAAATAGAAAATATTAATCTGAAATATTAATTCCAGGTATTGGTTATATGGTCTTTTTACTATAGAAATATTCCTTCTATCGCATGACATTGCTTATATTTAAATGATGATGTAAATCAACCTTTAGGCTTTATGGTCAGGTACACGCCTGCTGGTTCTCAATCTAGCAACCTATGTTTTGATCCAAGAACGCAATACCTAGTTCAACCACTGGGTGTCAAATATTAGTACTGTCAATTGATTAAAAAATAACTAATTAATCACACTTTTTTAAATTAATCATGATTAATCGTGATTAATCACATTTAAAAGACGGAAACTTGTAATTTTGGCTATTCAAATGTAAAATTAATGTAAAAGCAAGACAAAAACTATTTAAATTCTAAATATAATTGTTTATTAGAATTTTTGTTTAACTTGTAACACAGATTTCTTCATGTAAACAACATACCCACAATAAACCATCAAGATCCATAAAGCACAGGCCTGTAAATGCCATTTGAATTTTAAAACAATCAATGCCTATTAGGGAAAAAAAATATTTCCAAGTTGAATTCTAAGTGGACTGCAAAAAAAGCCAAAATACAGGCATTGCAAATAGGAAAATGAAAAATTATAATAACAATAAAGTATTAAATACAAACAATTGCACTCATTGAAAAGTTGTATTGCTGTCAGTAGAGAACATTCATTCATTAAAAGGGACAATGTGGCCCCTATCTTTTGAATGATGTGAGCTGAGACTGCAACGCAATCTCATGGCAATTCATAACTTTTTGATTTAGTGGCTACGGACAACGACGTTTAGGCAGGTTTTTTGCTGGCAGGTTTGTTGCATGCGCACACACACAAATACAGACACACACACTCACAAACACACACACAACACACGTAGGACATGGCAACTAGAGCAACTCCCTTCAGATTCAACACGCATGATCACATTTATCAAATTTGCTTAAACTAAGCGTTCTAAAGTATGGCTGTATTTCACAAGGATTCTGACACAACGCAAAGCAGACACTTGTGTTTAAGGGGGAAACACATCAAACTTAATAAAACATTGGAAGGTGTGTGCTGAAAGGCAGAGGAATGCGCTGTCTTTGACTTCATTTACATGGGCACTCTGATTTTAATATGATTAAAAGTATACTCTTATTAAGAGTCTACCATGTAAGCAGCGATTTTTGATTACTTTAAAGGACCACCGAGTCATGAAATGCGGAAGTTTTCCTTTCTGTTTGTCATGCGTTATCAAATTCCATAAAACAAAAGTCGAAAGTTAAAAATGAAACATACGAAATTAGATGAAACTTTGGAGGAAACGCTGGAGAGCCTGGTAATGCGACATTAATTGTTTTATAGTGAAACTTGCCTTCAAAAAGTGCTGTCTTGGTCTTATCCATATTTCTTTGCATGTTTACTACACGTTGGCCACAACAGGAAATAAATAAAAAAAACTGCAACTGCATTAATAGCGTTTATTTTTATTTATTTTTTTTATTATTTCAAATTAATCACATGCGTTAATGCACTAATTTTGACAGCACTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATAACTAATAAGCACTAATAAATATAAATATAAATATATATATAAATATATTAAATATATATATGTGTGTGCAAAAATGTTGTTGGTTGTCAATCAATTACTAATCTCTCCCTCCACCACTAATCAGCTCACTATATAAGACTATGATTAGAGTCCCTACAAAGTGTACTACCCGAGAATTGAACTTACTTCACTTACTTCCCTGTTTATTCATAGATTCGCACATACTGTAGAATTACCTCTTAATCGTGTTTATTGTGTATTCCAG
Seq C2 exon
GAAATCCCATTCTATCACATTTGGAGTGGGAGTCAGCGGCCGTTGCACTGCACCTTCAGTCTGGAGAGAGGAAGCCTGGTGGTTTCCCAGCTCACCTGCAAGATCTGTGTCAGACAGGTGGAGGGAGAGGGACAGATATTCCAACTCAACACTGACATCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033327:ENSDART00000045951:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]