BtaINT0157558 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014270 | UNC5B
Description
Bos taurus unc-5 homolog B (C. elegans) (UNC5B), mRNA. [Source:RefSeq mRNA;Acc:NM_001099029]
Coordinates
chr28:27596285-27597307:+
Coord C1 exon
chr28:27596285-27596434
Coord A exon
chr28:27596435-27597142
Coord C2 exon
chr28:27597143-27597307
Length
708 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACCCTGGCTGCCTCCCCCAGGAG
3' ss Score
8.25
Exon sequences
Seq C1 exon
GAGGTACTCGAGCTGGAACGGACCCTGGGTGGCTACCTAGTGGAGGAGCCAAAACCCTTGCTGTTTAAGGACAGTTACCATAACCTGCGCCTCTCCCTCCACGACATCCCCCATGCCCACTGGAGGAGCAAGCTGCTGGCCAAGTACCAG
Seq A exon
GTGAGGGCTGGGCCAAAGGAGGGGGAGGGGTGGGGCTGGGGCGGGGGCTGCCCAGAGATGACCTATCCCATCTCCCCACCTTCCCTCTCTGTCCGCAGCCTTGGTCCCCACACCCACCCTTGTGTCTCTCTCTTTCTCCCCTGGTACCCCGGTCATACACTCCCACACACACTATCTGTATACATTATCTTTAAAGAGGTCGTACCATCTCTAAGAGCATTCATGCCTGCCAGATTGTCCAGACTAATCTCTGATGGTCACATCCCTCTGCCCATGCCCATCTGTGTGAAACTATTGAATCCACAAGGCTTCCCAGTCCCACAGAGTCATACACACATAAGTACACACACACACACACACACACACACACACACACAGTCATATACTCAGACTCGTGCCTTCACACACACACACACACACACACACACACACACACACACACAGTCATATACTCAGACTCGTGCCTTCACACACACACACACACACACACACACACACACACACAGAGTCATATACTCAGACTCGTGCCTTCTTGCCTGTATGCTCCCTTTCTCAGTTGGAGGGCCCTTGCCCAGCTCCTCTTCTCTGCCTACCTGGATGGGAAGGTCCTAGCCTTCCCTGAGCTGGCCCCCTTCCCTGCCCACGCCTCCATTCCCTGAGGGCAGGGCCAGCTGGCCTCACCTCCTTAACCCTGGCTGCCTCCCCCAG
Seq C2 exon
GAGATCCCCTTCTGTCACATTTGGAGTGGCAGCCAGAAGGCCCTGCACTGCACCTTCACGCTGGAGAGGCACAGCCTGGCCTCCACGGAGCTCACCTGCAAGATCTGCGTGCGGCAGGTGGAGGGGGAGGGCCAGATATTCCAGCTGCATACCACGCTGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014270:ENSBTAT00000018961:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF094705=Telethonin=PD(15.9=36.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCGAGCTGGAACGGACC
R:
CTCTGCCAGCGTGGTATGC
Band lengths:
311-1019
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]