RnoINT0160603 @ rn6
Intron Retention
Gene
ENSRNOG00000000567 | Unc5b
Description
unc-5 netrin receptor B [Source:RGD Symbol;Acc:621756]
Coordinates
chr20:30345191-30346112:-
Coord C1 exon
chr20:30345963-30346112
Coord A exon
chr20:30345356-30345962
Coord C2 exon
chr20:30345191-30345355
Length
607 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTGACCACCTTTCCTGCAGGAG
3' ss Score
9.21
Exon sequences
Seq C1 exon
GAGGTCCTAGAACTGGAGAGGACTCTGGGTGGCTACTTGGTGGAGGAGCCCAAGCCTTTGCTCTTTAAGGACAGTTACCACAACCTACGCCTCTCCCTCCATGACATCCCCCATGCCCACTGGAGGAGCAAACTACTGGCCAAGTACCAG
Seq A exon
GTGAGCACTGGGCTCCTGGAGGGGTAGCAGGGTGGCGGGGGACCACTACTCCATCCTTTGTAGTGAAGCCCGGCTTCCTAGGTCTCTTGTCCCTGTCCTTTCTTCCCCACTTTAACATTCTTCATGTTCCCAGCAATCTTCAAGCCCAAGCTTAAATTCTCAGCCGCAAACAGCCACATTTTTGTCCCCTTTTGCACCTCCCCCAGCACAAATGCTCGTGGCCCTCACCCCCCTTCAGCCCCTTTTATACTTCAAGCTGCTGGTCTGGGGCCACACCCATCTGAATGCTAGCCTGAAGACTGACTCTCCTCGTCGCTGGCACTCAAGTCCCTCTGCTCCATTTTGGAATGTACAACACCACTGAGGCCCTATGCGTGCCAGCTTCTGTGTTTATGCACATTCAAACTTCTGTCTTCCCCCTCCCACACAGGCCCACTTCTCAACTCCCTCCAGAACCTAAATCCATTCAGCTACCTGTCTTTCCCTACTCTGGCTGTTTCAGAGAGACTTCATCTGCCCCTAGAGCCCAGCCCTCTCTAAGGCTGGGCCCCACCCACCTCTCCAAGTGCCCGGTCTTAACCTGCAACCCTGACCACCTTTCCTGCAG
Seq C2 exon
GAGATTCCCTTCTACCATGTGTGGAACGGCAGCCAGAAAGCCCTGCACTGCACTTTCACCCTGGAGAGACATAGCCTAGCCTCCACTGAGTTCACCTGTAAGGTCTGCGTGCGGCAGGTAGAAGGGGAAGGCCAGATTTTCCAGCTGCACACCACGCTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000567:ENSRNOT00000038537:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF094705=Telethonin=PD(15.5=36.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTAGAACTGGAGAGGACT
R:
CTCAGCCAGCGTGGTGTG
Band lengths:
313-920
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]