HsaINT0177865 @ hg19
Intron Retention
Gene
ENSG00000107731 | UNC5B
Description
unc-5 homolog B (C. elegans) [Source:HGNC Symbol;Acc:12568]
Coordinates
chr10:73055568-73056499:+
Coord C1 exon
chr10:73055568-73055717
Coord A exon
chr10:73055718-73056334
Coord C2 exon
chr10:73056335-73056499
Length
617 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTGACCCCCTCCTCCTGCAGGAG
3' ss Score
12
Exon sequences
Seq C1 exon
GAGGTGCTGGAGCTGGAGCGGACTCTGGGCGGATACTTGGTGGAGGAGCCGAAACCGCTAATGTTCAAGGACAGTTACCACAACCTGCGCCTCTCCCTCCATGACCTCCCCCATGCCCATTGGAGGAGCAAGCTGCTGGCCAAATACCAG
Seq A exon
GTGAGGGCTGGGCTGATGGATGGGGAGGGGCACCACTTAAGGGCTGCCCGGGAAGCCCAGCTCCCTCCCGGGCCCTGCCTCCTAGCTCTGTCCTGTGGCCTTACCCCTCCCTGGATCTCTCACTGTCTCTGTCTCCTCCCACCCCAGTCTCTAGGCTTTCAGCCATCCCCAGGCACGTCCCCAAATTCAGGGCAATGGGCAGCCACATGCACACTTCTGCCCTGTCACACCCTCACACGCACAGACGACTATGCCCTTCATCCTCACAGAGGCTCCTCACCCTTCAGGGCATGCCCTCCTGGCAGACTGCCCATCTCATCTCTGACAGCCACAGCCCGCTGCCCACCCAGCAGCGCCTGAGACCACAAGGCCCCCTAGCCCCTGACACACACACACCTGTGCCTTTCCCTCCCCCACCTACCCACCCTCAGCTCCCTTCTGGAACTGAGGGCCTGACACCAACTCAGCTGGCTAGCTTAGGGCACTTGACCCCTCCCTATCTGGGTGGAGAGGCCTGAACTGCCCCCCAAAGCTCCCAACCCTCCCTGAGCCTCCATTTCTATGAGGACAGGGCAGGCTGGCCTTGCCTGCCTGGTCCTGACCCCCTCCTCCTGCAG
Seq C2 exon
GAGATCCCCTTCTATCACATTTGGAGTGGCAGCCAGAAGGCCCTCCACTGCACTTTCACCCTGGAGAGGCACAGCTTGGCCTCCACAGAGCTCACCTGCAAGATCTGCGTGCGGCAAGTGGAAGGGGAGGGCCAGATATTCCAGCTGCATACCACTCTGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107731-UNC5B:NM_170744:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF094705=Telethonin=PD(15.8=36.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCTGGAGCTGGAGC
R:
CTCTGCCAGAGTGGTATGCAG
Band lengths:
315-932
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)