GgaINT1029320 @ galGal4
Intron Retention
Gene
ENSGALG00000018998 | UNC5A
Description
unc-5 netrin receptor A [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr13:9653816-9654201:-
Coord C1 exon
chr13:9654052-9654201
Coord A exon
chr13:9653981-9654051
Coord C2 exon
chr13:9653816-9653980
Length
71 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCGGCCGTGCTCCGCTGCAGGAG
3' ss Score
6.82
Exon sequences
Seq C1 exon
GAGGTGATGCAGCTGGAGAAGCAGATGGGGGGGCAGCTGATCGGGGCTCCCCGCGTGCTGCATTTCAAGGACAGCTACCACAACCTGCGGCTCTCCATCCACGACATGCCCAGCTCCCTCTGGAAGAGCAAGCTGCTTGCCAGCTACCAG
Seq A exon
GTAAGGAGAACGCAGCAAGGGGGCCCGCTGCAGCACCCAGAGCTGTGACCGCCGGCCGTGCTCCGCTGCAG
Seq C2 exon
GAGATCCCCTTCTACCACATCTGGAGCGGGCTGCAGCCCTACCTGCACTGCACCTTCACCCTGGAGCGCCTCAGCCCCAGCACCTGCGAGCTGGCCTGCAAGATCTGGATCTGGCAGGTGGAGGGCGATGGGCAGAGCTTCACCATCAACTGCAACATCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018998:ENSGALT00000029975:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGATGCAGCTGGAGAAG
R:
CCCGCTCCAGATGTGGTAGAA
Band lengths:
180-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]