BtaINT0157557 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014270 | UNC5B
Description
Bos taurus unc-5 homolog B (C. elegans) (UNC5B), mRNA. [Source:RefSeq mRNA;Acc:NM_001099029]
Coordinates
chr28:27594194-27596434:+
Coord C1 exon
chr28:27594194-27594427
Coord A exon
chr28:27594428-27596284
Coord C2 exon
chr28:27596285-27596434
Length
1857 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CATTGCTCCCTGGCCCACAGGAG
3' ss Score
7.98
Exon sequences
Seq C1 exon
GAAGTGGTGACCCTGGATGAGGAGACCCTGAATACCCCTTGCTACTGCCAGCTGGAGGCCAGGTCCTGCCACATCCTGCTGGACCAGCTGGGCACCTACGTGTTCACGGGTGAGTCTTACTCCCGCTCGGCAGTCAAGCGGCTCCAGCTGGCCATCTTTGCCCCGGCCCTCTGCACCTCGCTGGAGTACAGCCTCAGAGTCTACTGCCTAGAGGACACGCCTGTAGCACTGAAG
Seq A exon
GTAAGGCCAGACCATGGACGCCAGCACAGGCCCACACACTGCGGGTGCCTCGCCCACAGCCAGCCCATGCATGGTACCTTCCAGTACTCCCTCCCCGGGATCATGGCACCTGCCAGGCACCCTCCACCACCCTCAGCCTCATCCAGTCATTCCTTCATTCCTCAAACATTGAAATGGCATCAGAGCCTGGCGATACAGAGATGAGTCGGGCACAGTTCTGCCCTCACCAAGCTGTGGGCTAGAGGTGGAGCCAGACCTGAGGATCACTGATGCAGGGCTGCGGGAGCATCAGCCTGGGGATGCGGGCTGGCGGGGCTTGGTCGTTGGGGCCTTCTCAGAGCTGACCTTAGCCCTAAGCTCCCAAGGACAGGTGGGAGCTCCAGGCAGAGAAGGGAGAAGGGCATTCCGGGAGACGGAGACGTTTATGCAGAGGCAAGTGTGGTGGTCTGTGTGCCAAAGCGTGCTGGGGTGTGAGAGGCGGGGCTCGAGAGATGGCAGGGCTCGGCCTCCCGACAGCCTTGGGGTCATGCCAAGGAATTTGGAAGCCAGCCAGTGGGTGGGGGCAGAGACCTGGTGGACACCTATTCACAGGGGCTCTCTTGAAAGCTACGCTGTGGGGATGGATAGACAAACGACTGGGAGGCTGCAGCCAGACCTTGAGCTGGACCCCGGACAACAGGCAGGCAAGGGGGCTAAACTCTGTTTAGTTTTTAGTAGAATGGACAGAAGCAGTGACCAATGGAAAGAGTAAGGGGAAGTAAGGAAGGGTCAGGACTGACAACCAAGCTCCTAGTGTGTGCAGAACTGTGGATAGTGCCCCTGAGTGAGGGGGGGCCATGGCAGATGAGGAGGGGTTCAGGGCAGGTAGAGAGAGAAGGATTTTAGCACCTGCAACCTGATAACAGCAGGTGTTGGTACCTCCCTGTTTCCTGAGCCTCTAAGACCCTGTCCATTCTCTGCTCACGCTCCCGCCGGCTCCCAGGACTTCTGTCTCATCCTGACAAACAGTGGGAGAGCACAGACGCTTGGCCCTGTTTCAACCCCTCTTCCTTTTCCATCTTTCCGTCTCCCGGCTCTGTGAAGCCTCCTCCCTTCCTGTGGCTTTCTTCCACCCCTGGTCTGTGGGCTCTTCCAGCTCCTTAGCTTCCCGGTCTCATGTGACTTGTCTCAGACTCCAAGTTGCGGACTGATGCAACACAGGTGCAAAGGCCTCGTGGGAGAGAGTGTCCTCCTGAGACCAGGCTGACCTGAAATTCCAGGAGGCCCATAATGGGTTAGAGGGCCTGGATCTCTTGGTACTAGGGCACTGGCTAACATCCAGTTATGGTCAGAGAATAGGATGGAGATCAAGGGGGAAGTGGCCCATGTTGGTTTGATGTCATTCTTTGTTTATTCAGTCTCTGTCCATCCATGCAGTCATCCAGCCATCACTCACCCATCCATTTATCTTTTCTTCCATCTGACCTTCTGTTTACACACCCATCCATTTGTGTTTTCATCTAAACATCATTTTGTCTGTCTGTATCTATCCACCCATCCATTTGTCAGTCCGTCTATTGAGCCATCCATGTGTCTATTTGGTCACCTATAAATCCATTCATCCATCCACTTGTCCCACTATCTGTCCATTTATTAATCCATTTTTCTGTCTATCCACCCATACATCCACCCACTCAGTAAGTTTTCTTTGAGCACTTACCAAATGTCCAGTCCTGTGCCTCAGATGGACCCTGCTCTCAATGTTACAGCCTGGTTCCCTCTGTCCGCATGTGTCCCCAAGTCTCAAACCTGCAGCGAGAAAGAGCCTGTTGGCCCAATGTGATGGGCTCCCCTTTCTCATTGCTCCCTGGCCCACAG
Seq C2 exon
GAGGTACTCGAGCTGGAACGGACCCTGGGTGGCTACCTAGTGGAGGAGCCAAAACCCTTGCTGTTTAAGGACAGTTACCATAACCTGCGCCTCTCCCTCCACGACATCCCCCATGCCCACTGGAGGAGCAAGCTGCTGGCCAAGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014270:ENSBTAT00000018961:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF094705=Telethonin=FE(68.1=100)
A:
NA
C2:
PF094705=Telethonin=PD(15.9=36.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGTGACCCTGGATGAGG
R:
GGATGTCGTGGAGGGAGAGG
Band lengths:
342-2199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]