GgaINT0042394 @ galGal4
Intron Retention
Gene
ENSGALG00000004569 | UNC5B
Description
netrin receptor UNC5B precursor [Source:RefSeq peptide;Acc:NP_001026396]
Coordinates
chr6:11357600-11358597:+
Coord C1 exon
chr6:11357600-11357833
Coord A exon
chr6:11357834-11358447
Coord C2 exon
chr6:11358448-11358597
Length
614 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
ACCTGTCCTGCTATGCACAGGAA
3' ss Score
7.67
Exon sequences
Seq C1 exon
GAAGTGGTGACCCTGGATGAGGAGACCCTCAATACCCCCTGCTACTGCCAGCTGGAAGCCAAGTCCTGCCATGTCCTGCTAGACCAGCTGGGCACCTACGTTTTTGTGGGCGAGTCCTACTCCAGGTCAGCCATCAAGAGGCTCCAGTTGGCCATCTTTGCCCCTGCCATCTGCACCTCCCTGGAGTACAGCCTCAAGGTCTACTGCCTGGAGGATACTCCAGATGCACTGAAG
Seq A exon
GTACTGCAGGGATTTCATCATAGAATCATAGAAAGGCTTGGGTTGAAAGGGACCTTAGAGATCACTGAGTTCCAACATCTGCCATGGGTTGGCTGCCCCCCAGCAGCTCAGGCTGCCCAGGGCCCCATCTGTGGTCTTGGGCACCCCCAGGGATGGGGCACCCACAGCTCTATTAGACCGTATAAACAGTTGCTTCCCTTGCTTATAAGCTCCTTTCAAGTACTGGAAGAACTTCAGTGAGGTCTCCCCAGAGCCTTCTTTCCTCCAGACTGAATAAGCCCAGCTCTCTCAACCTTTCTTCATAGGAGAGGTGCTCCAGCCTTTGATCATCTTTGTAGCCCTTCTCTGGACCTGCTGCAATAGCTCCACATCCCTTCTGTACTGGTGGCCTCACGCCAATGGGGCTGTATGGGCCACCATGGGTGCAGTGGTTGTTTAATTCCCTATGCCTTGTTCTGCCATGTCAGGATTGCTCTAGTGCCTCTAGGTGGAGGTGTAGGCAGCACTATACTTCTTGGATTTTCTGCAAGTTCCCAAATCTAAGCTGAAGGTCGGGCTGGGAGTGGGGAGAGTTGGGCTCCTGAGGCTGATGCCACCTGTCCTGCTATGCACAG
Seq C2 exon
GAAGTGCTGGAGTTGGAGCGGACGCTGGGTGGGTACCTGCTGGAGGAGCCCAAGCCCCTGCCCTTCAAGGACAGCTACCACAACCTGCGTCTCTCCATCCACGACATCCCCCACTCATTGTGGAGGAGCAAGCTGCTGGCCAAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569:ENSGALT00000033690:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCAATACCCCCTGCTAC
R:
GCTTGCTCCTCCACAATGAGT
Band lengths:
343-957
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]