BtaINT0157585 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002919 | UNC5CL
Description
unc-5 homolog C (C. elegans)-like [Source:HGNC Symbol;Acc:HGNC:21203]
Coordinates
chr23:14962839-14963888:-
Coord C1 exon
chr23:14963626-14963888
Coord A exon
chr23:14962941-14963625
Coord C2 exon
chr23:14962839-14962940
Length
685 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
AGGCCCTTTCCTCTCTGCAGGTT
3' ss Score
10.17
Exon sequences
Seq C1 exon
CCTCTACACCTGTGTGCTGGAGGCGCCGGTGGGCCGGGAAGCCCGAAAGTGGCTGCAGCTGGCCCTGTTCTGCTCGCCGCTGGCCCCGGGGCAGTCCCACCTGCAGCTGCGTGTCTACTTCCTCAACAACACGCCCTGTGCCCTGCAGTGGGCCGTGACCAACGAGCAGCCACACGGTGGACGCCTGCGCGGGCCCTGCCAGCTCTTTGACTTCACTGGGGCCCGAGGGGACCAGTGCCTGAAACTCAAATACATCTCAGAGG
Seq A exon
GTGAGGGACGCCGGGCCGGGGGACAGGGCATCTGGGAGCCCCATGGAGGGAGGGGTCTGGGCCTTCTCTGAGGTGGAAATCTGGGTGCCTCAAGTTTCTTTTTGAGACTTCTGGGCATGCAGCAGCCTTGGGGGGCCGGAGTGGGGTTTGCTTCTGGCTCCTCCTGCTGCCTCCTGGAGCCCCAGGCTTTGCTCAATACCTCCCTCTGCGGCACTCAGCCCTGGTCCTCCGTGGGAGGGCAGATGATGCTAGTGGGCAGCGGGAGAAGATGTGTTGCCTCCACAGGGGCAGGGAGGGGTGAGAAGGCTTCTATGGTCCTGCCTGGTTGAAGCCCACGTCACAGGAGGAGGCCCAGTCCTTTCCACCTTCGTTCCTTTGTGCGTTGGCTGCAGGAATTGTCCATGGGGCCAAGGGTGTGGTTGTGTGGGTGTGGACAGGGTGCGCAATGGTGCTGCTTCTAGAGGATGGGAGGGTGTGGGTTGGATGGGAAGGTGGAGGGGCGGAGGGGTGGGTCTGTGTGCTGGTAGAAGGAAGACCACTCACAGGGTCCCCGCCCAGGCCCTGGGACCCACCACCGACTGAGTCACCCTCCAGCCTTTGCTCCTGCCCTGCCCGTCCCCTCGGCTCCTGCCCTTACCTCCTCTTAAATGAAGGTCACCCTTCTGAGGCCCTTTCCTCTCTGCAG
Seq C2 exon
GTTGGGAGAACGTGGATGACAGCAGCTGTCAGCTCGTGCCACATCTGCACATCTGGCACGGGAAGTGCCCCTTCCGCTCCTTCTGCTTCCGCAGAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002919:ENSBTAT00000003791:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACACCTGTGTGCTGGAGG
R:
GAAGCAGAAGGAGCGGAAGG
Band lengths:
350-1035
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]