HsaINT0177894 @ hg19
Intron Retention
Gene
ENSG00000124602 | UNC5CL
Description
unc-5 homolog C (C. elegans)-like [Source:HGNC Symbol;Acc:21203]
Coordinates
chr6:40999775-41000885:-
Coord C1 exon
chr6:41000623-41000885
Coord A exon
chr6:40999877-41000622
Coord C2 exon
chr6:40999775-40999876
Length
746 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
GCTGTCTGCCTACTCACCAGGTT
3' ss Score
5.68
Exon sequences
Seq C1 exon
CCTCTACACCTGTGTGCTGGAGGCACCTGTGGGGCGCGAAGCCCGCAAATGGCTGCAGCTGGCCGTATTCTGCTCACCGCTGGTGCCAGGACAGTCCCATCTGCAACTGCGTATCTACTTCCTCAACAACACGCCCTGCGCCCTGCAGTGGGCACTGACCAACGAGCAGCCCCATGGTGGGCGCCTGCGTGGGCCCTGCCAGCTCTTCGACTTCAATGGGGCTAGGGGCGACCAGTGCCTGAAGCTCACGTACATCTCAGAGG
Seq A exon
GTGAGGGAGGCAGTGGCCTGTGGGATAGGATGATCGGGAGCCCCACAGGAATGAAGGGTTCTGGGCCTCCCCTGGACATCTGGAGATCTGGGGATCCCAAGTCTCTCTCTCTTTTTTTTTCCCGAGATGGAGTTTCGCTCTGTTGCCCAGGCCGGAGTGCAGTGGCTTGATCTTGGCTCACAGCAACCTCCGCCTCCTGGGTTCAAGTTATTCTCCTGCCTCAGTCTCCTGAGTAGCTGCAATTACAGGTGCCCACCACCATGCCTGGCTAATTTTTTTGTATTTTTGGTAGAGACGGGGTTTCATCATGTTGTCCAGGCTGGTCTCGAACCCCTGACCTCAAGTAATCTACCCGTCTCGGCCTCTGAAAGTGTTGGGATTATAGGTGTGAGCCACCACACCAGGCCCCAAGTCTGTTTGTGACCTCTGGGCCAGCAGTAGCCTCATGGAGCCCCCAGGGCTTTGACCACTCTGCTGTCTACTGAGCCCTTGCCACTCACTCCTTGGACAGGGTGATGCCAGGTGGCAGGTGGGAAGGAGAGGGGTTATACCCCACAGAAGCAGGAAAGGATGGAAGGCTTTTATAGTGCAAGGGCCCTCTTGGGGTCCCAGCCCAGGCTCTGGGGATTCCCATTCCCTTGAGACCCTCCTGCCTTTGTTCTGTCCTCATGCCTCCCCACAGCCCCCTTCAATACTTGTTTAAGGCCCCACTCTCTGAGGCCCTCTGCTGTCTGCCTACTCACCAG
Seq C2 exon
GTTGGGAGAATGTGGATGACAGCAGTTGCCAGCTGGTTCCCCATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGCTCCTTCTGCTTCCGGAGAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124602-UNC5CL:NM_173561:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACACCTGTGTGCTGGAGG
R:
TTCTCCGGAAGCAGAAGGAGC
Band lengths:
357-1103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)