HsaEX0069389 @ hg19
Exon Skipping
Gene
ENSG00000124602 | UNC5CL
Description
unc-5 homolog C (C. elegans)-like [Source:HGNC Symbol;Acc:21203]
Coordinates
chr6:40998394-41001920:-
Coord C1 exon
chr6:41001620-41001920
Coord A exon
chr6:41000623-41000885
Coord C2 exon
chr6:40998394-40998494
Length
263 bp
Sequences
Splice sites
3' ss Seq
GCCACTGGCTCCCTCTGCAGCCT
3' ss Score
8.2
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GTGCTGTGGCTGTGGGCCGCCAGGAGCGGGTGTCTTTGATCCTGGTGTGGGACCTGTCGGACGCCCCATCGCTGTCCCAAGCCCAGGGGCTGGTAAGCCCTGTGGTGGCATGTGGCCCCCATGGGGCCTCCTTCCTGAAGCCTTGCACTCTCACGTTCAAACACTGTGCCGAGCAGCCCAGCCATGCTCGCACCTACAGCAGCAACACTACCCTGCTGGATGCCAAGGTATGGAGGCCCCTGGGGCGGCCGGGGGCCCACGCCTCCCGGGATGAGTGTCGCATCCACCTCTCCCACTTCAG
Seq A exon
CCTCTACACCTGTGTGCTGGAGGCACCTGTGGGGCGCGAAGCCCGCAAATGGCTGCAGCTGGCCGTATTCTGCTCACCGCTGGTGCCAGGACAGTCCCATCTGCAACTGCGTATCTACTTCCTCAACAACACGCCCTGCGCCCTGCAGTGGGCACTGACCAACGAGCAGCCCCATGGTGGGCGCCTGCGTGGGCCCTGCCAGCTCTTCGACTTCAATGGGGCTAGGGGCGACCAGTGCCTGAAGCTCACGTACATCTCAGAGG
Seq C2 exon
GGCTTGGAGACCAAGTATATGGAAATCCTCAGATTCCAGGCATCAGAGGAGGAATCCTGGGCAGCGCCACCACCTGTTTCCCAGCCGCCCCCATGCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124602_MULTIEX1-3/5=2-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.412
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(70.7=69.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGATCCTGGTGTGGGACCT
R:
GCCTGGAATCTGAGGATTTCCA
Band lengths:
308-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)