HsaEX0069389 @ hg38
Exon Skipping
Gene
ENSG00000124602 | UNC5CL
Description
unc-5 family C-terminal like [Source:HGNC Symbol;Acc:HGNC:21203]
Coordinates
chr6:41032036-41034181:-
Coord C1 exon
chr6:41033955-41034181
Coord A exon
chr6:41032884-41033146
Coord C2 exon
chr6:41032036-41032137
Length
263 bp
Sequences
Splice sites
3' ss Seq
GCCACTGGCTCCCTCTGCAGCCT
3' ss Score
8.2
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GTGCTGTGGCTGTGGGCCGCCAGGAGCGGGTGTCTTTGATCCTGGTGTGGGACCTGTCGGACGCCCCATCGCTGTCCCAAGCCCAGGGGCTGGTAAGCCCTGTGGTGGCATGTGGCCCCCATGGGGCCTCCTTCCTGAAGCCTTGCACTCTCACGTTCAAACACTGTGCCGAGCAGCCCAGCCATGCTCGCACCTACAGCAGCAACACTACCCTGCTGGATGCCAAG
Seq A exon
CCTCTACACCTGTGTGCTGGAGGCACCTGTGGGGCGCGAAGCCCGCAAATGGCTGCAGCTGGCCGTATTCTGCTCACCGCTGGTGCCAGGACAGTCCCATCTGCAACTGCGTATCTACTTCCTCAACAACACGCCCTGCGCCCTGCAGTGGGCACTGACCAACGAGCAGCCCCATGGTGGGCGCCTGCGTGGGCCCTGCCAGCTCTTCGACTTCAATGGGGCTAGGGGCGACCAGTGCCTGAAGCTCACGTACATCTCAGAGG
Seq C2 exon
GTTGGGAGAATGTGGATGACAGCAGTTGCCAGCTGGTTCCCCATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGCTCCTTCTGCTTCCGGAGAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124602_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(70.7=69.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGGTGTCTTTGATCCTG
R:
CTGCTTTTCTCCGGAAGCAGA
Band lengths:
306-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development