MmuEX6078283 @ mm10
Exon Skipping
Gene
ENSMUSG00000043592 | Unc5cl
Description
unc-5 family C-terminal like [Source:MGI Symbol;Acc:MGI:1923839]
Coordinates
chr17:48460485-48463463:+
Coord C1 exon
chr17:48460485-48460785
Coord A exon
chr17:48462176-48462438
Coord C2 exon
chr17:48463362-48463463
Length
263 bp
Sequences
Splice sites
3' ss Seq
GCCACCATCTCCCTCCGCAGTCT
3' ss Score
8.86
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GTGCTGTGACCGTGGGTCGCCAGGAGAGGGTGTCCTTGGTTCTGGTGTGGGACCTGACAGATGCCCCGTCACTGTCTCACAGACAGGGACTAGTGAGTCCTGTGGTGGCCTGTGGCCCTCACGGGGCCTCTTTCCTGAAGCCTTGCACCCTCACGTTCAAGCACTGCGCCCAACAGCCCAGTCAAGCCTGTGCCTACAGCAGCAATACCTCCTTGCTGGATGCCAAGGACTGGAAACCCCTGGGTCAGCCGGGGACTCATATCTCCAGGGACGAGTGTCGTATCCTGCTCTCTCACTTCAG
Seq A exon
TCTCTACACCTGCGTTCTGGAGGCCCCCCTGGGCCAGACAGCCCGCAAGTGGCTGCAGCTGGCCATGTTCTGCTCCCCACTGGTGCCAGGGCAGACACACCTGCAGCTGCGCGTCTACTTCCTGAACAACACTCCCTGCGCCCTGCAGTGGGCTATCACCAATGAACAGCCGCACGGGGGACGCATGCGCGGGCCGTGCCAGCTCTTCGACTTCACTGGGGCCAGAGCAGACCAGTGCCTGAAGCTCAAGTACATCTCTGAGG
Seq C2 exon
GTTGGGAGAATGTGGATGATAGCAGTAGCCAGCTGGTTCCACATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGTTCTTTCTGCTTCCGGAGAAAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043592-'1-12,'1-4,5-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(70.7=69.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGTGGGACCTGACAGAT
R:
GATGTGGAACCAGCTGGCTAC
Band lengths:
305-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types