BtaEX6097449 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002919 | UNC5CL
Description
unc-5 homolog C (C. elegans)-like [Source:HGNC Symbol;Acc:HGNC:21203]
Coordinates
chr23:14962839-14964913:-
Coord C1 exon
chr23:14964613-14964913
Coord A exon
chr23:14963626-14963888
Coord C2 exon
chr23:14962839-14962940
Length
263 bp
Sequences
Splice sites
3' ss Seq
GCCACCGTCTCTCTCTGCAGCCT
3' ss Score
10.92
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GTGCTGTGTCCATGGGCCGCCAGGAGCGGGTGTCGTTGACCCTGGTGTGGGACCTGACGGATGCCCCCTCGCTGTCCCGGGCTCAGGGGCTGGTGAGCCCCGTGGTGGCGTGTGGCCCCCACGGGGCCTCCTTCCTGAAGCCCTGCACCCTCACCTTCAAGCACTGTGCCCAGCAGCCCAGCCAGGCCCGCGCCTACAGCAGCAACACTGCCCTGCTGGACACCAAGGCCTGGAAGCCGCTGGGGCGGCCGGGGGACCACACCTCCCGGGATGAATGTCGCATCCACCTTTCCCACTTCAG
Seq A exon
CCTCTACACCTGTGTGCTGGAGGCGCCGGTGGGCCGGGAAGCCCGAAAGTGGCTGCAGCTGGCCCTGTTCTGCTCGCCGCTGGCCCCGGGGCAGTCCCACCTGCAGCTGCGTGTCTACTTCCTCAACAACACGCCCTGTGCCCTGCAGTGGGCCGTGACCAACGAGCAGCCACACGGTGGACGCCTGCGCGGGCCCTGCCAGCTCTTTGACTTCACTGGGGCCCGAGGGGACCAGTGCCTGAAACTCAAATACATCTCAGAGG
Seq C2 exon
GTTGGGAGAACGTGGATGACAGCAGCTGTCAGCTCGTGCCACATCTGCACATCTGGCACGGGAAGTGCCCCTTCCGCTCCTTCTGCTTCCGCAGAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002919-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(70.7=69.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCGTTGACCCTGGTGTG
R:
CTGCTGTCATCCACGTTCTCC
Band lengths:
297-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]