RnoEX0096633 @ rn6
Exon Skipping
Gene
ENSRNOG00000046601 | Unc5cl
Description
unc-5 family C-terminal like [Source:RGD Symbol;Acc:1587368]
Coordinates
chr9:14499305-14501898:-
Coord C1 exon
chr9:14501598-14501898
Coord A exon
chr9:14500071-14500333
Coord C2 exon
chr9:14499305-14499406
Length
263 bp
Sequences
Splice sites
3' ss Seq
GCCATCCTCTCCCTCCACAGTCT
3' ss Score
10.66
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GTGCCGTGACCGTGGGTCGCCAGGAAAGGGTGTCCTTGGTTCTGGTTTGGGACCTGACAGATGCCCCGTCGTTGTCTCACAAACAGGGACTAGTGAGTCCTGTGGTGGCCTGCGGCCCTCACGGGGCCTCTTTCCTGAAGCCCTGCATACTCACATTCAAGCACTGCGCCCAGCAGCCGAGTCAAGTCTGTGCCTACAGCAGCAATACCTCCTTGCTGGATGCCAAGGACTGGAGGCCCCTGGGCCAGCCGGGGACTCATACCTCCAGGGATGAGTGCCGTATCCTGCTCTCTCACTTCAG
Seq A exon
TCTCTACACCTGTGTTCTGGAGCCACCCCTGGGCCAGACAGCCCGCAAGTGGCTGCAGCTGGCAATGTTCTGCTCCCCACTGGCACCAGGGCAGACACACCTTCAGCTGCGCGTCTACTTCCTAAACAATACTCCCTGCGCCCTGCAGTGGGCTATCACCAACGAACAGCCGCATGGAGGACGCATGCGCGGGCCCTGCCAGCTCTTCGACTTCACTGGGGCCCGAGCAGACCAATGCCTGAAGCTCAAGTACATCTCCGAGG
Seq C2 exon
GTTGGGAGAATGTGGATGACAGCAGTAGCCAACTGGTTCCCCATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGTTCCTTCTGCTTCCGGAGAAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046601_MULTIEX1-2/7=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(70.7=69.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTCGTTGTCTCACAAACA
R:
GGCACTTTCCATGCCAGATGT
Band lengths:
306-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]