MmuEX6078283 @ mm9
Exon Skipping
Gene
ENSMUSG00000043592 | Unc5cl
Description
unc-5 homolog C (C. elegans)-like [Source:MGI Symbol;Acc:MGI:1923839]
Coordinates
chr17:48599810-48602788:+
Coord C1 exon
chr17:48599810-48600110
Coord A exon
chr17:48601501-48601763
Coord C2 exon
chr17:48602687-48602788
Length
263 bp
Sequences
Splice sites
3' ss Seq
GCCACCATCTCCCTCCGCAGTCT
3' ss Score
8.86
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GTGCTGTGACCGTGGGTCGCCAGGAGAGGGTGTCCTTGGTTCTGGTGTGGGACCTGACAGATGCCCCGTCACTGTCTCACAGACAGGGACTAGTGAGTCCTGTGGTGGCCTGTGGCCCTCACGGGGCCTCTTTCCTGAAGCCTTGCACCCTCACGTTCAAGCACTGCGCCCAACAGCCCAGTCAAGCCTGTGCCTACAGCAGCAATACCTCCTTGCTGGATGCCAAGGACTGGAAACCCCTGGGTCAGCCGGGGACTCATATCTCCAGGGACGAGTGTCGTATCCTGCTCTCTCACTTCAG
Seq A exon
TCTCTACACCTGCGTTCTGGAGGCCCCCCTGGGCCAGACAGCCCGCAAGTGGCTGCAGCTGGCCATGTTCTGCTCCCCACTGGTGCCAGGGCAGACACACCTGCAGCTGCGCGTCTACTTCCTGAACAACACTCCCTGCGCCCTGCAGTGGGCTATCACCAATGAACAGCCGCACGGGGGACGCATGCGCGGGCCGTGCCAGCTCTTCGACTTCACTGGGGCCAGAGCAGACCAGTGCCTGAAGCTCAAGTACATCTCTGAGG
Seq C2 exon
GTTGGGAGAATGTGGATGATAGCAGTAGCCAGCTGGTTCCACATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGTTCTTTCTGCTTCCGGAGAAAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043592-'2-8,'2-2,3-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.021
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(70.7=69.3)
A:
NO
C2:
PF129462=EGF_MSP1_1=PU(57.1=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGTGGGACCTGACAGAT
R:
GATGTGGAACCAGCTGGCTAC
Band lengths:
305-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: