HsaEX0069390 @ hg38
Exon Skipping
Gene
ENSG00000124602 | UNC5CL
Description
unc-5 family C-terminal like [Source:HGNC Symbol;Acc:HGNC:21203]
Coordinates
chr6:41030655-41034181:-
Coord C1 exon
chr6:41033955-41034181
Coord A exon
chr6:41032036-41032137
Coord C2 exon
chr6:41030655-41030755
Length
102 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTGCCTACTCACCAGGTT
3' ss Score
5.68
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
Exon sequences
Seq C1 exon
GTGCTGTGGCTGTGGGCCGCCAGGAGCGGGTGTCTTTGATCCTGGTGTGGGACCTGTCGGACGCCCCATCGCTGTCCCAAGCCCAGGGGCTGGTAAGCCCTGTGGTGGCATGTGGCCCCCATGGGGCCTCCTTCCTGAAGCCTTGCACTCTCACGTTCAAACACTGTGCCGAGCAGCCCAGCCATGCTCGCACCTACAGCAGCAACACTACCCTGCTGGATGCCAAG
Seq A exon
GTTGGGAGAATGTGGATGACAGCAGTTGCCAGCTGGTTCCCCATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGCTCCTTCTGCTTCCGGAGAAAAGCAG
Seq C2 exon
GGCTTGGAGACCAAGTATATGGAAATCCTCAGATTCCAGGCATCAGAGGAGGAATCCTGGGCAGCGCCACCACCTGTTTCCCAGCCGCCCCCATGCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124602_MULTIEX1-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.412
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(70.7=69.3)
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000244565fB31352
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGGTGTCTTTGATCCTG
R:
TTCCTCCTCTGATGCCTGGAA
Band lengths:
258-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development