BtaEX6097450 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002919 | UNC5CL
Description
unc-5 homolog C (C. elegans)-like [Source:HGNC Symbol;Acc:HGNC:21203]
Coordinates
chr23:14962520-14963888:-
Coord C1 exon
chr23:14963626-14963888
Coord A exon
chr23:14962839-14962940
Coord C2 exon
chr23:14962520-14962587
Length
102 bp
Sequences
Splice sites
3' ss Seq
AGGCCCTTTCCTCTCTGCAGGTT
3' ss Score
10.17
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
CCTCTACACCTGTGTGCTGGAGGCGCCGGTGGGCCGGGAAGCCCGAAAGTGGCTGCAGCTGGCCCTGTTCTGCTCGCCGCTGGCCCCGGGGCAGTCCCACCTGCAGCTGCGTGTCTACTTCCTCAACAACACGCCCTGTGCCCTGCAGTGGGCCGTGACCAACGAGCAGCCACACGGTGGACGCCTGCGCGGGCCCTGCCAGCTCTTTGACTTCACTGGGGCCCGAGGGGACCAGTGCCTGAAACTCAAATACATCTCAGAGG
Seq A exon
GTTGGGAGAACGTGGATGACAGCAGCTGTCAGCTCGTGCCACATCTGCACATCTGGCACGGGAAGTGCCCCTTCCGCTCCTTCTGCTTCCGCAGAAAAGCAG
Seq C2 exon
CCAAAGACAACGAGGACTGCTCTGCGCTGACCAATGAGATCATCGTCACGATGCACACCTTCCAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002919-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGCCCTGTTCTGC
R:
TGATCTCATTGGTCAGCGCAG
Band lengths:
250-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]