RnoEX0096634 @ rn6
Exon Skipping
Gene
ENSRNOG00000046601 | Unc5cl
Description
unc-5 family C-terminal like [Source:RGD Symbol;Acc:1587368]
Coordinates
chr9:14498219-14500333:-
Coord C1 exon
chr9:14500071-14500333
Coord A exon
chr9:14499305-14499406
Coord C2 exon
chr9:14498219-14498319
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCTGCCCTGTCCTTCCCCAGGTT
3' ss Score
12.13
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TCTCTACACCTGTGTTCTGGAGCCACCCCTGGGCCAGACAGCCCGCAAGTGGCTGCAGCTGGCAATGTTCTGCTCCCCACTGGCACCAGGGCAGACACACCTTCAGCTGCGCGTCTACTTCCTAAACAATACTCCCTGCGCCCTGCAGTGGGCTATCACCAACGAACAGCCGCATGGAGGACGCATGCGCGGGCCCTGCCAGCTCTTCGACTTCACTGGGGCCCGAGCAGACCAATGCCTGAAGCTCAAGTACATCTCCGAGG
Seq A exon
GTTGGGAGAATGTGGATGACAGCAGTAGCCAACTGGTTCCCCATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGTTCCTTCTGCTTCCGGAGAAAGTCAG
Seq C2 exon
GGCTTGGAAACCAAATACATGGAAATCCTCAGATTCCAGGCCTCAGAGGAGGAGACCTGGGCGGTTCCCCCTCCTGTCTCCCAGCCGCCCCTGTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046601_MULTIEX1-3/7=2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGTTCTGCTCCCCACTGG
R:
CTGAGGCCTGGAATCTGAGGA
Band lengths:
247-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]