MmuEX6078282 @ mm9
Exon Skipping
Gene
ENSMUSG00000043592 | Unc5cl
Description
unc-5 homolog C (C. elegans)-like [Source:MGI Symbol;Acc:MGI:1923839]
Coordinates
chr17:48601501-48603867:+
Coord C1 exon
chr17:48601501-48601763
Coord A exon
chr17:48602687-48602788
Coord C2 exon
chr17:48603767-48603867
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCTGTCTCTCCACAGGTT
3' ss Score
14.79
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
TCTCTACACCTGCGTTCTGGAGGCCCCCCTGGGCCAGACAGCCCGCAAGTGGCTGCAGCTGGCCATGTTCTGCTCCCCACTGGTGCCAGGGCAGACACACCTGCAGCTGCGCGTCTACTTCCTGAACAACACTCCCTGCGCCCTGCAGTGGGCTATCACCAATGAACAGCCGCACGGGGGACGCATGCGCGGGCCGTGCCAGCTCTTCGACTTCACTGGGGCCAGAGCAGACCAGTGCCTGAAGCTCAAGTACATCTCTGAGG
Seq A exon
GTTGGGAGAATGTGGATGATAGCAGTAGCCAGCTGGTTCCACATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGTTCTTTCTGCTTCCGGAGAAAGGCAG
Seq C2 exon
GGCTTGGAAACCAAATACGTTGAAATCCTCAGATTCCAGGCATCGGAGGAAGAGACCTGGGCAGTGCCCCCTCCTGTCTCCCAGCCACCCCTGTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043592-'3-10,'3-8,4-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.021 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
PF129462=EGF_MSP1_1=PU(57.1=45.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTCTGCTCCCCACTGGT
R:
TTCCTCCGATGCCTGGAATCT
Band lengths:
250-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: