HsaEX0069391 @ hg38
Exon Skipping
Gene
ENSG00000124602 | UNC5CL
Description
unc-5 family C-terminal like [Source:HGNC Symbol;Acc:HGNC:21203]
Coordinates
chr6:41030655-41032137:-
Coord C1 exon
chr6:41032036-41032137
Coord A exon
chr6:41031681-41031748
Coord C2 exon
chr6:41030655-41030755
Length
68 bp
Sequences
Splice sites
3' ss Seq
CTGTCACCTTCTCTTTATAGCCG
3' ss Score
9.92
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTTGGGAGAATGTGGATGACAGCAGTTGCCAGCTGGTTCCCCATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGCTCCTTCTGCTTCCGGAGAAAAGCAG
Seq A exon
CCGATGAGAATGAGGACTGTTCAGCACTAACCAATGAGATCATTGTCACCATGCACACCTTCCAGGAT
Seq C2 exon
GGCTTGGAGACCAAGTATATGGAAATCCTCAGATTCCAGGCATCAGAGGAGGAATCCTGGGCAGCGCCACCACCTGTTTCCCAGCCGCCCCCATGCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124602_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATGACAGCAGTTGCC
R:
CTGGGAAACAGGTGGTGGC
Band lengths:
177-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development