MmuEX0050639 @ mm9
Exon Skipping
Gene
ENSMUSG00000043592 | Unc5cl
Description
unc-5 homolog C (C. elegans)-like [Source:MGI Symbol;Acc:MGI:1923839]
Coordinates
chr17:48602687-48603867:+
Coord C1 exon
chr17:48602687-48602788
Coord A exon
chr17:48602902-48602969
Coord C2 exon
chr17:48603767-48603867
Length
68 bp
Sequences
Splice sites
3' ss Seq
CATCTTGCTTCTCTTTGTAGCCA
3' ss Score
8.97
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTTGGGAGAATGTGGATGATAGCAGTAGCCAGCTGGTTCCACATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGTTCTTTCTGCTTCCGGAGAAAGGCAG
Seq A exon
CCAATGGGAATGAAGAGTGCTCGGCATTAACCAATGAGATCATTGTCACCATGCACACCTTCCAGGAT
Seq C2 exon
GGCTTGGAAACCAAATACGTTGAAATCCTCAGATTCCAGGCATCGGAGGAAGAGACCTGGGCAGTGCCCCCTCCTGTCTCCCAGCCACCCCTGTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043592_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF129462=EGF_MSP1_1=PU(57.1=45.7)
A:
PF129462=EGF_MSP1_1=PD(39.3=47.8)
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGCCAGCTGGTTCCACATC
R:
GTTGCACAGGGGTGGCTG
Band lengths:
177-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types