RnoEX0096635 @ rn6
Exon Skipping
Gene
ENSRNOG00000046601 | Unc5cl
Description
unc-5 family C-terminal like [Source:RGD Symbol;Acc:1587368]
Coordinates
chr9:14498219-14499406:-
Coord C1 exon
chr9:14499305-14499406
Coord A exon
chr9:14499130-14499197
Coord C2 exon
chr9:14498219-14498319
Length
68 bp
Sequences
Splice sites
3' ss Seq
CATCTTGCTTCTCTTTGTAGCCA
3' ss Score
8.97
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTTGGGAGAATGTGGATGACAGCAGTAGCCAACTGGTTCCCCATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGTTCCTTCTGCTTCCGGAGAAAGTCAG
Seq A exon
CCAATGGGAATGAAGAGTGCTCGACTTTAACCAATGAGATCATTGTCACCATGCACACCTTCCAGGAT
Seq C2 exon
GGCTTGGAAACCAAATACATGGAAATCCTCAGATTCCAGGCCTCAGAGGAGGAGACCTGGGCGGTTCCCCCTCCTGTCTCCCAGCCGCCCCTGTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046601_MULTIEX1-4/7=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGATGACAGCAGTAGCCA
R:
GGGAGACAGGAGGGGGAAC
Band lengths:
174-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]