MmuEX0050639 @ mm10
Exon Skipping
Gene
ENSMUSG00000043592 | Unc5cl
Description
unc-5 family C-terminal like [Source:MGI Symbol;Acc:MGI:1923839]
Coordinates
chr17:48463362-48464542:+
Coord C1 exon
chr17:48463362-48463463
Coord A exon
chr17:48463577-48463644
Coord C2 exon
chr17:48464442-48464542
Length
68 bp
Sequences
Splice sites
3' ss Seq
CATCTTGCTTCTCTTTGTAGCCA
3' ss Score
8.97
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTTGGGAGAATGTGGATGATAGCAGTAGCCAGCTGGTTCCACATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGTTCTTTCTGCTTCCGGAGAAAGGCAG
Seq A exon
CCAATGGGAATGAAGAGTGCTCGGCATTAACCAATGAGATCATTGTCACCATGCACACCTTCCAGGAT
Seq C2 exon
GGCTTGGAAACCAAATACGTTGAAATCCTCAGATTCCAGGCATCGGAGGAAGAGACCTGGGCAGTGCCCCCTCCTGTCTCCCAGCCACCCCTGTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043592_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGCCAGCTGGTTCCACATC
R:
GTTGCACAGGGGTGGCTG
Band lengths:
177-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types