HsaALTA1021952-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000124602 | UNC5CL
Description
unc-5 family C-terminal like [Source:HGNC Symbol;Acc:HGNC:21203]
Coordinates
chr6:41030655-41031748:-
Coord C1 exon
chr6:41031681-41031748
Coord A exon
chr6:41030724-41030755
Coord C2 exon
chr6:41030655-41030723
Length
32 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
CCTGCCCTGTGTTGACTCAGGGC
3' ss Score
8.55
Exon sequences
Seq C1 exon
CCGATGAGAATGAGGACTGTTCAGCACTAACCAATGAGATCATTGTCACCATGCACACCTTCCAGGAT
Seq A exon
GGCTTGGAGACCAAGTATATGGAAATCCTCAG
Seq C2 exon
ATTCCAGGCATCAGAGGAGGAATCCTGGGCAGCGCCACCACCTGTTTCCCAGCCGCCCCCATGCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124602-9-11,9-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAATGAGGACTGTTCAGCAC
R:
CTGGGAAACAGGTGGTGGC
Band lengths:
116-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains