HsaINT0177894 @ hg38
Intron Retention
Gene
ENSG00000124602 | UNC5CL
Description
unc-5 family C-terminal like [Source:HGNC Symbol;Acc:HGNC:21203]
Coordinates
chr6:41032036-41033146:-
Coord C1 exon
chr6:41032884-41033146
Coord A exon
chr6:41032138-41032883
Coord C2 exon
chr6:41032036-41032137
Length
746 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
GCTGTCTGCCTACTCACCAGGTT
3' ss Score
5.68
Exon sequences
Seq C1 exon
CCTCTACACCTGTGTGCTGGAGGCACCTGTGGGGCGCGAAGCCCGCAAATGGCTGCAGCTGGCCGTATTCTGCTCACCGCTGGTGCCAGGACAGTCCCATCTGCAACTGCGTATCTACTTCCTCAACAACACGCCCTGCGCCCTGCAGTGGGCACTGACCAACGAGCAGCCCCATGGTGGGCGCCTGCGTGGGCCCTGCCAGCTCTTCGACTTCAATGGGGCTAGGGGCGACCAGTGCCTGAAGCTCACGTACATCTCAGAGG
Seq A exon
GTGAGGGAGGCAGTGGCCTGTGGGATAGGATGATCGGGAGCCCCACAGGAATGAAGGGTTCTGGGCCTCCCCTGGACATCTGGAGATCTGGGGATCCCAAGTCTCTCTCTCTTTTTTTTTCCCGAGATGGAGTTTCGCTCTGTTGCCCAGGCCGGAGTGCAGTGGCTTGATCTTGGCTCACAGCAACCTCCGCCTCCTGGGTTCAAGTTATTCTCCTGCCTCAGTCTCCTGAGTAGCTGCAATTACAGGTGCCCACCACCATGCCTGGCTAATTTTTTTGTATTTTTGGTAGAGACGGGGTTTCATCATGTTGTCCAGGCTGGTCTCGAACCCCTGACCTCAAGTAATCTACCCGTCTCGGCCTCTGAAAGTGTTGGGATTATAGGTGTGAGCCACCACACCAGGCCCCAAGTCTGTTTGTGACCTCTGGGCCAGCAGTAGCCTCATGGAGCCCCCAGGGCTTTGACCACTCTGCTGTCTACTGAGCCCTTGCCACTCACTCCTTGGACAGGGTGATGCCAGGTGGCAGGTGGGAAGGAGAGGGGTTATACCCCACAGAAGCAGGAAAGGATGGAAGGCTTTTATAGTGCAAGGGCCCTCTTGGGGTCCCAGCCCAGGCTCTGGGGATTCCCATTCCCTTGAGACCCTCCTGCCTTTGTTCTGTCCTCATGCCTCCCCACAGCCCCCTTCAATACTTGTTTAAGGCCCCACTCTCTGAGGCCCTCTGCTGTCTGCCTACTCACCAG
Seq C2 exon
GTTGGGAGAATGTGGATGACAGCAGTTGCCAGCTGGTTCCCCATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGCTCCTTCTGCTTCCGGAGAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124602:ENST00000373164:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACACCTGTGTGCTGGAGG
R:
TTCTCCGGAAGCAGAAGGAGC
Band lengths:
357-1103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains