HsaEX0069387 @ hg38
Exon Skipping
Gene
ENSG00000124602 | UNC5CL
Description
unc-5 family C-terminal like [Source:HGNC Symbol;Acc:HGNC:21203]
Coordinates
chr6:41032036-41033146:-
Coord C1 exon
chr6:41032884-41033146
Coord A exon
chr6:41032636-41032757
Coord C2 exon
chr6:41032036-41032137
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTTTTTTTCCCGAGATG
3' ss Score
4.22
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
CCTCTACACCTGTGTGCTGGAGGCACCTGTGGGGCGCGAAGCCCGCAAATGGCTGCAGCTGGCCGTATTCTGCTCACCGCTGGTGCCAGGACAGTCCCATCTGCAACTGCGTATCTACTTCCTCAACAACACGCCCTGCGCCCTGCAGTGGGCACTGACCAACGAGCAGCCCCATGGTGGGCGCCTGCGTGGGCCCTGCCAGCTCTTCGACTTCAATGGGGCTAGGGGCGACCAGTGCCTGAAGCTCACGTACATCTCAGAGG
Seq A exon
ATGGAGTTTCGCTCTGTTGCCCAGGCCGGAGTGCAGTGGCTTGATCTTGGCTCACAGCAACCTCCGCCTCCTGGGTTCAAGTTATTCTCCTGCCTCAGTCTCCTGAGTAGCTGCAATTACAG
Seq C2 exon
GTTGGGAGAATGTGGATGACAGCAGTTGCCAGCTGGTTCCCCATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGCTCCTTCTGCTTCCGGAGAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124602-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000244565fB31352
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGTCCCATCTGCAACTG
R:
GGCACTTTCCATGCCAGATGT
Band lengths:
244-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development