HsaEX0069387 @ hg19
Exon Skipping
Gene
ENSG00000124602 | UNC5CL
Description
unc-5 homolog C (C. elegans)-like [Source:HGNC Symbol;Acc:21203]
Coordinates
chr6:40999775-41000885:-
Coord C1 exon
chr6:41000623-41000885
Coord A exon
chr6:41000375-41000496
Coord C2 exon
chr6:40999775-40999876
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTTTTTTTCCCGAGATG
3' ss Score
4.22
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
CCTCTACACCTGTGTGCTGGAGGCACCTGTGGGGCGCGAAGCCCGCAAATGGCTGCAGCTGGCCGTATTCTGCTCACCGCTGGTGCCAGGACAGTCCCATCTGCAACTGCGTATCTACTTCCTCAACAACACGCCCTGCGCCCTGCAGTGGGCACTGACCAACGAGCAGCCCCATGGTGGGCGCCTGCGTGGGCCCTGCCAGCTCTTCGACTTCAATGGGGCTAGGGGCGACCAGTGCCTGAAGCTCACGTACATCTCAGAGG
Seq A exon
ATGGAGTTTCGCTCTGTTGCCCAGGCCGGAGTGCAGTGGCTTGATCTTGGCTCACAGCAACCTCCGCCTCCTGGGTTCAAGTTATTCTCCTGCCTCAGTCTCCTGAGTAGCTGCAATTACAG
Seq C2 exon
GTTGGGAGAATGTGGATGACAGCAGTTGCCAGCTGGTTCCCCATCTCCACATCTGGCATGGAAAGTGCCCCTTCCGCTCCTTCTGCTTCCGGAGAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124602-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGTCCCATCTGCAACTG
R:
GGCACTTTCCATGCCAGATGT
Band lengths:
244-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)