HsaINT0177893 @ hg19
Intron Retention
Gene
ENSG00000124602 | UNC5CL
Description
unc-5 homolog C (C. elegans)-like [Source:HGNC Symbol;Acc:21203]
Coordinates
chr6:41000623-41001920:-
Coord C1 exon
chr6:41001620-41001920
Coord A exon
chr6:41000886-41001619
Coord C2 exon
chr6:41000623-41000885
Length
734 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GCCACTGGCTCCCTCTGCAGCCT
3' ss Score
8.2
Exon sequences
Seq C1 exon
GTGCTGTGGCTGTGGGCCGCCAGGAGCGGGTGTCTTTGATCCTGGTGTGGGACCTGTCGGACGCCCCATCGCTGTCCCAAGCCCAGGGGCTGGTAAGCCCTGTGGTGGCATGTGGCCCCCATGGGGCCTCCTTCCTGAAGCCTTGCACTCTCACGTTCAAACACTGTGCCGAGCAGCCCAGCCATGCTCGCACCTACAGCAGCAACACTACCCTGCTGGATGCCAAGGTATGGAGGCCCCTGGGGCGGCCGGGGGCCCACGCCTCCCGGGATGAGTGTCGCATCCACCTCTCCCACTTCAG
Seq A exon
GTAGGCACATGCCATTGGCCTGTCTTCCCACACCCATCTCTCTGAGGACTGTCTTTCCTGCCCACTTTCTCTGTCTGCCTTATCTTCATCTCTCTGTATAGAAGATGGTCTGCAAATCCTTTATCCCCTGGTGTCTCTTTCTGGCCCCTCTGTCCTAATGTTTGTAGCAGTTTTTCTCACATCAATCATGTCCATGACTGCAAATCCCATTGCTGTCTCTCTGTCTGTCTGGAAGTGTCTGACTCAGCACCATCTCTCCATCTAAGAGGGACCTGTCTTTCCCATCTCTCTCTGTCTTTCAAATTATCTCTCTCTACACTGTGCCCCTTTCAGGACTGTCCCCAGGCTTAGCACCAGTTCTCTAAGACTCCATTCCATCTCTGTCCTTCTTCTCTTTGTCTTTCTAGAGTCCTAGGTCCTCTGCCTCCCAGCCTCCTTGCCACCCATTGACAGGAATAGGGCCATGTGCGGGTGCCCTCCCAAGCATGGTCACCCTGAGCCCACTTTCCCTCTCTCCCCTGCCAGCTCTCCTCCCCATTCAGTCACCAGTCACTGTGACATGCTCACTTTTCATCCCCAACCTACCAGTTCCTCCCTAAGTGCTCCCCTCGAGTGTTCTCTGAACCTCCTTGAAGGCCCCACAGAGGCCCCTCAGGTGGCAGGAGGCTGGTGGCAGTGTGTTGGTGTCTTAGCCTTCCCTGCACATTAGTGCCTGCCACTGGCTCCCTCTGCAG
Seq C2 exon
CCTCTACACCTGTGTGCTGGAGGCACCTGTGGGGCGCGAAGCCCGCAAATGGCTGCAGCTGGCCGTATTCTGCTCACCGCTGGTGCCAGGACAGTCCCATCTGCAACTGCGTATCTACTTCCTCAACAACACGCCCTGCGCCCTGCAGTGGGCACTGACCAACGAGCAGCCCCATGGTGGGCGCCTGCGTGGGCCCTGCCAGCTCTTCGACTTCAATGGGGCTAGGGGCGACCAGTGCCTGAAGCTCACGTACATCTCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124602-UNC5CL:NM_173561:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(70.7=69.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGGATGCCAAGGTATG
R:
ATGTACGTGAGCTTCAGGCAC
Band lengths:
345-1079
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)