MmuINT0170615 @ mm9
Intron Retention
Gene
ENSMUSG00000043592 | Unc5cl
Description
unc-5 homolog C (C. elegans)-like [Source:MGI Symbol;Acc:MGI:1923839]
Coordinates
chr17:48599810-48601763:+
Coord C1 exon
chr17:48599810-48600110
Coord A exon
chr17:48600111-48601500
Coord C2 exon
chr17:48601501-48601763
Length
1390 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GCCACCATCTCCCTCCGCAGTCT
3' ss Score
8.86
Exon sequences
Seq C1 exon
GTGCTGTGACCGTGGGTCGCCAGGAGAGGGTGTCCTTGGTTCTGGTGTGGGACCTGACAGATGCCCCGTCACTGTCTCACAGACAGGGACTAGTGAGTCCTGTGGTGGCCTGTGGCCCTCACGGGGCCTCTTTCCTGAAGCCTTGCACCCTCACGTTCAAGCACTGCGCCCAACAGCCCAGTCAAGCCTGTGCCTACAGCAGCAATACCTCCTTGCTGGATGCCAAGGACTGGAAACCCCTGGGTCAGCCGGGGACTCATATCTCCAGGGACGAGTGTCGTATCCTGCTCTCTCACTTCAG
Seq A exon
GTGGGCCTCTGTCCGTTGGCCTGTCCTTCTCTTATGTGTCTCTGAATGACCCCATTGGCCAGTCCTCTTGTTTTATGTCTTTTCTCTGTCTGTCTCCTTCTTATCTTTCTGTCAGAACTGCCTGCCCCTTCATTCATTTAGCATGCTTTGACAGTCTCTTAGACCTGCATGCCCCTCTCTGAGCCCACTGTTCTAATATTCACCTTAGTCCTGTCATCAAATCCCATCCCATCTGAGACTGTGTCCCATTGCTGTCTCAGTGCCTATCTGCAGTCACCTGATTCAACTCATCCCTCTATCTAGCAAACTAGCAAGCATGTCCAACCCACAAGCCACAGACCCCAGACAGCCTGAATATCTATAAACATGACCCAACACAAAATAGAAAACTTGCTTAAAACATTAGAAGATTTTTTTTTTAAACTCAATTGCATGGTTCTTGAGTGTGACTTTGTGGATGATGTCATTGTGTCTCAATGTCAAAAGGTTGGGCACTCCTGTAGTGAGTTTGTTCCTCCTCACATCTGCCTTAGAGCTGCCTCTCTTCAGGACTGTCTCTAAACTCTTGTTTGTTTGTTTGTTTGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCCGGCTCTCCTGGAACTCACTCTGTAGACTAGGCTGGCATCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAACTCTTAAGGGTAGCCTGTCCCTTTAAGGCTCATGTCATGTCTGTCCTCCATCTCATAGGCTCTGAGGTCCCTGCCTCCTAGATTCCTTACCACCCATTGACTAGAGGAGAGCCATGTGCACCTCTTTCAAGTCGTGGGAACCCTGTGATTAATTTGTCTCCACTGCCAGATAACGCACACTGGCTCTCCTCCCCAGGAGGTGGCAGTCACTGTATTAGTAATGTTTTTTACTGCCCTGACAATGGACCCAACATAAGCAAGCAAAGAAAGGAATGGTTCGTCGGGGTCCCATCGCAAGCCGGTTAACCACCGCGGCAAGCTGGTCACGTGGCCTCTTCAGTCAAGCATTGGAGAAAGAGATAGTTCTCGCTACTCCCATTTGTTTTTCCCACCTCTGTAATTCAAGTGAGAAACTCCCTTAATGGTATGCCCAGAGATTTGTCCCTGTGGTGATTCTAGAGCCTGTCAAGACGACAGCGTGAACGTCACAGTCCTCCCGGCCCACTCACTTCTTGACCCTCGAAGTCACTCTCTCCCTCACCTGGTCCTCCCTCTATGCCTATTTGGAGAGGAGATTGCATCACCCACATAGAGACCCCTTAGATGACAGGAGCCTGGTGGTAGGCACCTTGGGATCTATGCCTTTCTGGTGCCTATGTGTAGATCTCTGCCACCATCTCCCTCCGCAG
Seq C2 exon
TCTCTACACCTGCGTTCTGGAGGCCCCCCTGGGCCAGACAGCCCGCAAGTGGCTGCAGCTGGCCATGTTCTGCTCCCCACTGGTGCCAGGGCAGACACACCTGCAGCTGCGCGTCTACTTCCTGAACAACACTCCCTGCGCCCTGCAGTGGGCTATCACCAATGAACAGCCGCACGGGGGACGCATGCGCGGGCCGTGCCAGCTCTTCGACTTCACTGGGGCCAGAGCAGACCAGTGCCTGAAGCTCAAGTACATCTCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043592-Unc5cl:NM_152823:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(70.7=69.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGTGAGTCCTGTGGTGGC
R:
TTGTTCAGGAAGTAGACGCGC
Band lengths:
342-1732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: