BtaINT0157584 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002919 | UNC5CL
Description
unc-5 homolog C (C. elegans)-like [Source:HGNC Symbol;Acc:HGNC:21203]
Coordinates
chr23:14963626-14964913:-
Coord C1 exon
chr23:14964613-14964913
Coord A exon
chr23:14963889-14964612
Coord C2 exon
chr23:14963626-14963888
Length
724 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GCCACCGTCTCTCTCTGCAGCCT
3' ss Score
10.92
Exon sequences
Seq C1 exon
GTGCTGTGTCCATGGGCCGCCAGGAGCGGGTGTCGTTGACCCTGGTGTGGGACCTGACGGATGCCCCCTCGCTGTCCCGGGCTCAGGGGCTGGTGAGCCCCGTGGTGGCGTGTGGCCCCCACGGGGCCTCCTTCCTGAAGCCCTGCACCCTCACCTTCAAGCACTGTGCCCAGCAGCCCAGCCAGGCCCGCGCCTACAGCAGCAACACTGCCCTGCTGGACACCAAGGCCTGGAAGCCGCTGGGGCGGCCGGGGGACCACACCTCCCGGGATGAATGTCGCATCCACCTTTCCCACTTCAG
Seq A exon
GTGGGCACCCACCTGTGGGCCTGGACTTCCCGCCCCCTGTCTCTGCCTGCCTCGTCCTCACCTCTCTGCGGGGACTGCCTCTTATTCTGTCCAAGCTGGCCTGCAAAGCCCATATCCCCCATCCTTCCCCACTCCCTCTGTTCCAGTGCCTATGGCTGCTTATCTTGCTCCCACCCCATTCGGACTGTGCATCCCCCCATGGTCCCTCTGTCTGTCTAGAAAGGTCTGGCTCAGCCCTGGTCGTCTGTCTAGAGGGGCCTGTCCCATCTCCACCTCTGTCTCTAATATTGTCTGTCCCTTCCCTGTGCCCTGGCTCAGGACTGTCTCCCCGCTGTCTAGGACACGTTGCCCCCCTCCAGTTCTTTAAGACTCCACCCCATGTCATGTCTGTCCTTAGCTCTGTCCTTCTAGGATCTTAGATCCTCTGCCTCCCAGTCTCCTTGCCACCCATGACCAGAGCAGGGCCATGCATGGTGGCCCGAAGCTCAGCTTCCATCTTTCCTACACTGACACAGTGACAGTCACTGACATGACTCACATTCCGTCCCTCTAGCCAACCCCTCCACCCTAGTTCTTCCCTACATGGCCTGGAATGTTCTCCTTTCCTCTCCGGAGGCCCCCCACAGAGGCCCCTGGTGTGGTGGGAGCCGGGTGGCAGGTGGCCTGGTGTCCCAGCCTCCCCAGTCCCATCGCACGTGGTCCCTGCCACCGTCTCTCTCTGCAG
Seq C2 exon
CCTCTACACCTGTGTGCTGGAGGCGCCGGTGGGCCGGGAAGCCCGAAAGTGGCTGCAGCTGGCCCTGTTCTGCTCGCCGCTGGCCCCGGGGCAGTCCCACCTGCAGCTGCGTGTCTACTTCCTCAACAACACGCCCTGTGCCCTGCAGTGGGCCGTGACCAACGAGCAGCCACACGGTGGACGCCTGCGCGGGCCCTGCCAGCTCTTTGACTTCACTGGGGCCCGAGGGGACCAGTGCCTGAAACTCAAATACATCTCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002919:ENSBTAT00000003791:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(70.7=69.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCACTGTGCCCAGCAG
R:
GAAGTCAAAGAGCTGGCAGGG
Band lengths:
358-1082
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]