RnoINT0160630 @ rn6
Intron Retention
Gene
ENSRNOG00000046601 | Unc5cl
Description
unc-5 family C-terminal like [Source:RGD Symbol;Acc:1587368]
Coordinates
chr9:14500071-14501898:-
Coord C1 exon
chr9:14501598-14501898
Coord A exon
chr9:14500334-14501597
Coord C2 exon
chr9:14500071-14500333
Length
1264 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
GCCATCCTCTCCCTCCACAGTCT
3' ss Score
10.66
Exon sequences
Seq C1 exon
GTGCCGTGACCGTGGGTCGCCAGGAAAGGGTGTCCTTGGTTCTGGTTTGGGACCTGACAGATGCCCCGTCGTTGTCTCACAAACAGGGACTAGTGAGTCCTGTGGTGGCCTGCGGCCCTCACGGGGCCTCTTTCCTGAAGCCCTGCATACTCACATTCAAGCACTGCGCCCAGCAGCCGAGTCAAGTCTGTGCCTACAGCAGCAATACCTCCTTGCTGGATGCCAAGGACTGGAGGCCCCTGGGCCAGCCGGGGACTCATACCTCCAGGGATGAGTGCCGTATCCTGCTCTCTCACTTCAG
Seq A exon
GTGGGGCTCTGTCCATTGGCCCGTCCTCCTCCTGTGCATCTCTGATTGTCCCCATTGGCAGGTCCTCTCGGTCTGTGTTTCTCTGACTGTCTTTTCTCTCTGCCTCCTTCTTAGCTTTGTCTGAACTCCCTGTGCGTGTCCCTCTCTGAGCCCACTGTTCTAATGTTCATGATAGTCCTATCCTCAAAATGCCATCTGAGACCATGACCCCTTGCTGTCTCAGTGCCTGTATGGAGGCACGCGGTTCAACTCATCCCTCTGTCTCGCAAACATGTCCAACCCACAACCCACAGGCAGCCTGAATATCTACAAACAAGACCCAACACAAAATAGTAGACCTTGCTTAGAACATTAGATTTTTTTTTTTTTTTGAAATTCAATTGCGTGGTTCTTGAATGTGACTTTGCGGATGACGTCATTGTGTTCAGTGTCAAAAGGTTGGGCACTCCTGTAGTGAGTTTGCCCCATCTCCACATCTGTCTTTTAATGCTGCCTCTGTTTACCCTGTGTCTTTTTTCAGGACGGTCTCTAAACTCTTAAGGGTAGCTTGTCCCCTTCAGGCCCATGCCATGTCTGTCCTCCATCTCGTAGGCTCTTAGATCCCCTGTTTCCTATACTGCTCATCACCCATTGACCTGAGAACCATGTGTACCCGCTTCGAGTCATGGGGACCCTGTGGTGACTTCATCTCCACTGCCAGATAATGCACACTGGCTCTCCTCCCTAGGAGGTGGCGGTCACTGTATTAGTACTGTCATTTACTGCCGTGACATGGACTTGACATAAGCAATTGAAGAAAGGAGTAGTTAGTTGGGTTCCCATCGCAAGGGTACAGTTAACCACGGCGGCAGGCGTTTGAGGCAGCTTGACCTCTTCAGTCAAGCACTGGAGAAAGAGATGGCTTTCACTACTCCGTTTGTTTTTTCCGCCCAGTCCGGGAATCCCATCCTGTTCATCAGGGTGGGTCTTGCCACTTCTGTAACTCAAGTGACAAACTCCCTTATTGATATGCCCAGAGATTTGTCCCCAAGGTGATTCTAGGGCCTGTCAGTATGAACACCGCAGTCCTCATGGCCCACTCACTTCTTGATCCTCTAAGCCACTCTGTCCTTCACCTGGTCCTCCCTCTATGCCTATTTGGAGTGGTCTCCTCACCCACATAGAGACCCCTCAGATGACAGGAGCCTGGTGGTAGGCACCTTGGGGTCTATCCGATCTTTCTGGGTGCCTATGTGTAGCTCTCTGCCATCCTCTCCCTCCACAG
Seq C2 exon
TCTCTACACCTGTGTTCTGGAGCCACCCCTGGGCCAGACAGCCCGCAAGTGGCTGCAGCTGGCAATGTTCTGCTCCCCACTGGCACCAGGGCAGACACACCTTCAGCTGCGCGTCTACTTCCTAAACAATACTCCCTGCGCCCTGCAGTGGGCTATCACCAACGAACAGCCGCATGGAGGACGCATGCGCGGGCCCTGCCAGCTCTTCGACTTCACTGGGGCCCGAGCAGACCAATGCCTGAAGCTCAAGTACATCTCCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046601:ENSRNOT00000073556:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(70.7=69.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTGTCCTTGGTTCTGGTT
R:
CCAGTGGGGAGCAGAACATTG
Band lengths:
358-1622
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]