BtaINT0157589 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002919 | UNC5CL
Description
unc-5 homolog C (C. elegans)-like [Source:HGNC Symbol;Acc:HGNC:21203]
Coordinates
chr23:14959072-14961412:-
Coord C1 exon
chr23:14961299-14961412
Coord A exon
chr23:14959295-14961298
Coord C2 exon
chr23:14959072-14959294
Length
2004 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
3' ss Seq
CTGGCCCCGCTCCCGGCCAGGTT
3' ss Score
6.21
Exon sequences
Seq C1 exon
GCTGCCCCCAGAGCTCTTTGAGCAGCTGCAGATGTTATTGGAGCCAAACAGCATCACTGGCAATGACTGGCGGCGACTGGCCTCCCACCTGGGGCTCTGCGGTATGAAAATCCG
Seq A exon
GTAAGAGGGATAAGGTCTGCACGTGGGAGCGGAGGGTGGACTGGTGGGGGTTCTCAGGACCCCTTGGAGACTGGACCATTCACAGGAGAGTGACTTAAAAGTCAGAGAATGGCTGTGCCCCACCCTACTTCCCAGAAGAGAATCGATTTCATTGGCAGTGATCTCACTGGTTTGGGTCCCGCACTCCTCGTTGTCATGGCTTCAAAGAGAAGAGGACATGACAGGTGAGAGAGGAAAAAGCCAGGGGAGAGGACCAGGGGAAGTCAAAGGGACTCCATACGAAGGTTCTGGACATCTTTCTGTTTATCACTGTATTATTGGTACCTAGAGCGATGCCTGGATCATGGCCAGTGTTCAGTACATAAATATTGGCTCAGTAAATATTTAACAATGAATCAGTTCACATGTAAGTCACTGGTACATACTGAGTGCTTGACATGCTGTGCCCTGCGGGGCAGAATGGAAGACTACAGGATAATGTGTGTAAAGCCTGTAGCTGAGTGCATGGCACACGTTAATTTAATAAACATCGGCAAAACAGGCGGTGCAGCTATGGTCTCTGTGAAGAGAGATGAGTAGACCAATTCTGAGCTGAGTCCAGCACTCAGATGATAACAGTGGTCAAAGACCGCACCCAGGAGATGGGATGAGAGCTGGATCCTTAAAACAAGGTAGATTTAAAAATCACCCACTTAAAAGACTTCCCTGGTGGTTCAGTGGTTAAGACTCTGTGCTTCCACTGCAGGGGGTGTGGGTTCAACCCCTGGCTAGGGAATTAAGATTCTGCATGCCATAGGGTGTGGCATAAATAAATAAATAAAAATTCTCCCTCAAAAGCAAAAAAATAAAACCACTCTTTTATTAAACATTTATCAAGTACCTACTAAGTCCTGGAAAAGCTATACTAAGCATTGGGATACAGAATGAATAAAATATGGTCCCAACACCAGGGAGGTCACTCTATACTAAGGGATACAGAGAGCTTAAAAAAATCAAGGTATGTGTTCCTTTGACATTATTTTTATGTACCCAATATTGTGAGGCAAGTTGAAAACAGGTATGAAATGGCTAAAGTGAGAATAATGAAGACTTAGGTCAATTACAGTTGACCTGCACAATGTAGAGGTTAGAGGGGTGACCCTCCATGCAGTTGAAATCCTAGTGTAACTTACAGGTCCCCTCCACGTCCACAGTTCAGCCTCCACAGATCCAACCAGGGACCACGTAGTACTGTAATATTTACTGTTGGAAAAAATCTGCATGTAAGTGGACTCACACAGCTCAAAGCGGTGATGTTCGAGAGTCAACTAAATATCTCAATTACATAAAAAAGAATAATAAAGTCTAATGGGAGTCTGGACTAAGGGGTGCAGAATGGTCTCCTCCACCTGAGGTGGGAACAAGGGCTTCAGGTGGTAGGGAAGTTGGGGATCAACTTGGGGAGGGGGGCAGACGGTCAACTGCAGACCTGATATGCTTAAGGTGGGAAGGAAGGTTCAGGATGGGAGCCGGAGAAAAGGTCAGAAAAACAGGGCAAGGCCAAATGGTGGGTGGGCAGGGAAGTCAGGAGAGTGGGCTTGGTTAGCCGGTGAAAGAGACTCTGGAGGGGTTTTGAGCAGGGGAGGGCCATGGGTAGGAAGAACTATTTGCCTGGTGGTGGGCAGGATGTGGCCTGGGAGAGATGGAGGGTGGGGAGTGTTCGCGGTGGGGGTAGGGCGCAGAGAAGGCAAACACAGAACATTGCAGCTGGATATTCTCAGAGGTCTTCTCATCCAAGCCCTGGTGTGAGAAAAGAGGAGGCTGAAGCCTAGAGAGGAGCAGACTTTGAGCCAGTGCAATCTCAGATGTGACCCAGGCAATCTCTGATTTCAAAGTCCTGGGTCCTCTCACCATCTAGAGTGCCCTGAAAGAAGGCATGATGAGGGCCAGAGCTGGGGGGAGGTGGGTGGTGATCTCAACGCAGGGCCCCCTCCCTCCTCTCACCCTGGCCCCGCTCCCGGCCAG
Seq C2 exon
GTTCATGTCCTGTCAGCGCAGCCCCGCGGCAGCCATCCTGGAGCTATTTGAGGAGCAGAATGGCAGCCTCCAGGAGCTGCACTACCTCATGACCCTCATGGAGCGGCTGGACTGCGCCTCCGTTATCCAGAACTACCTGAACGGGACGCAAAGCGGCAGCCCACCCCGGCTGCGCGCTGGCGCCCAGGAGAACCAGGGCCTGGAGCTGGACGAGAAGCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002919:ENSBTAT00000003791:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.257
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(39.7=79.5)
A:
NA
C2:
PF0053117=Death=PD(59.0=61.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]