HsaINT0177898 @ hg19
Intron Retention
Gene
ENSG00000124602 | UNC5CL
Description
unc-5 homolog C (C. elegans)-like [Source:HGNC Symbol;Acc:21203]
Coordinates
chr6:40994640-40998240:-
Coord C1 exon
chr6:40998127-40998240
Coord A exon
chr6:40996335-40998126
Coord C2 exon
chr6:40994640-40996334
Length
1792 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGA
5' ss Score
8.18
3' ss Seq
CCTCCCCTACCTCGGGCCAGGTT
3' ss Score
6.93
Exon sequences
Seq C1 exon
GCTGCCCCCAGAGCTCTTTGAGCAGCTGCGGATGTTATTGGAGCCAAACAGCATCACCGGCAATGACTGGCGCAGACTGGCCTCCCACCTGGGGCTTTGCGGCATGAAGATCCG
Seq A exon
GTAGGAAGAGGGGTGAGGTCTGTGGATGGTAGAGGAGGGTGGGCTGGAATGGGGTTCCTCAGGACACTCTGGAGACTGGATCACAGGCAAGGGAGTGACTTAAAAGTCAGAGAATGGCTACTGTCCACCCTATTTCCCATAAAAGGGCAGCTCTATTAATCACTGTATCATCAGTACCTAGAATGATGCCTGGTGCATAGTAGGTGCTCAATTAACATTTAACAGTGAATCCATTAACATGGAAGTTATTTGGTACATGTTGAGTGCTTGCCATGCTATGCCCTGAGGAGGAGCAAGACAGATTATAGGATAATGTGTGTAAAGCATGTAGCTGGGTGCCTGACACTTGTTAATTCAATAAATGTTATCAATAATGGTGACAGTGCAGTCATGATCCCTGTCAAGGAACTCAGAAAGCAGGAGAATACTGAGCTAAGCTCCAGAAACTACACTATGAGTGCAGCGGTCAGGGAAGACTTTATCCTGGTGATGGGGCTAGAGCTGGACCCTGAAAACAGGGTGGATTTTTATTTATTATTATTATCATTATTTGAGACGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAATGGCGCAATCTTGGCTCACTGCAACCTCCATCTCCCGGGTTCAAGTAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACACGCCACCATGTCCAGCTAATTTTTTATTTTTAGTACAGACGGGGTTTCACCAGGTTGGCCAGGCTGGTCTGCAAACTACAGGGTGGATTTTTAAATCATTCATTTAAACATTTATCAAGTACCTATTATGCCCTGGAAACTGTGCTAAGCACTATGATACAAGATGAATGAGGCATGGTCCCGGCGCCTAGGAGCGCACACACTAGTAAAGGGTTCAGAGAGCTTGAAAAATAAAGGCAAGTGTTCCTTGTGCCTTCCTGTAAGAATCCAGTATTGTATAACACATTGAAGAGAGACAGAAAACAGCTGAAGCAAGAATAATAATGAACTGCGGGCGTTATGACCAGAAGTCTGAACTGAGGGATGCAGAATGTTCTCTTCCACCTGGGAGGGGTGAACTAGAAAGGGCTTCAGGGAGGAAGTGATGGGGAAGAGATCAGCCATTTTGTTTTGGGGAGTAGCAGAGGTGGCTGTGGGTGTAGTGTGTGCAAGGCGAGAAAGAGAGAGGCCTGAGCTAAGGGGGTTCAGGATGGGAGAAAGGAGAGAAAGCATAAAGACAGGGCAAGGCCAGGTGCTGGATGAGCCAGAAAGGCTCATGGAGCGTGGGCTGGTTAGGAGGTGAGAGACTCTGGAAGGTTTTAGTGGACGGGAGAGTCGTGATAAAAAGCCATGGTTTACAGCAACTGTTTCCTTAGTAGTGAGCAGGATGTTGTGGCCTAGGAGAGAGGGAGGAAGGAGGGAGTTAGGAGGCTAGGGGGAGGCTAGGGGTGTATTTGGAGTGGGGGAGGTAGAGAAGGCAATTACAGAACATCAGAACTGTAGCAAACTTAGAGGTCCTCTTGTCTAAGCCCTCATCTTAATAAGAGGAAACTGAAGCCTAGAGAGGAGTAGGGGTCAGAGTTGGCCTCCAAGCCAGGACAATCTCAAGTTTCAAAGCCCTGGGGCTTCCCACCTCCTGTGCCCTGGAAGGCAGGCAAGAGCAGGACAAGGACAAAAGCTACAGGATGGGGAAGGGACGGACCTTGCGCTGCGCAGCCCAGGGAGCCTGCAGCAGGGGGGGAGCCCCTCCCTGCTCCTACACCCTTCTCTTCCTCCCCTACCTCGGGCCAG
Seq C2 exon
GTTCCTGTCCTGCCAGCGCAGCCCCGCAGCGGCCATCCTGGAGTTGTTTGAGGAGCAGAACGGCAGCCTGCAGGAGCTGCACTACCTCATGACCGTCATGGAGCGGCTAGACTGCGCCTCCGCCATCCAGAACTACCTGAGTGGGACACACGGCGGCAGCCCAGGCCCCGAGCGCGGGGGCGCCCGGGATAACCAGGGCCTGGAGCTGGACGAGAAGCTCTGAGCGCCCAGCGGGCAGGGCCGGAGGAGGTGTAGGGGCGAGAGGGGTTGTTCTCCTACGCCTAAGAGGAACACAGCAGCTGTTCCTGGCTGTGCCCACCACCCTTCCCAGAACCCTCGGACGGTGCCAGGGCCGCCCGCGTCCTCGCCAGCCTCCCAGCAGCAGGCGCGCCCTTCCGGCCGCGAGCTGTCCCGCGTGCGGGTCCCCTCCTGGCCGGCAGAGGGCGCAGGAGCCCAGGAGATGGCCTCAGCGTGGCCAGCCTGCCAAACTGACCAGGGGACGGCCACGGTCCCCGCGTGCACTTTAGGGCCGGTCAGGCCCTAAAGTATTCACTGAGCACTTAGGAAGACCGGGCATTGGGCTGGTGTCATGAAGAATACTGGAATATAGGAGGTAGGGTCTGGAGCCCTGACAAGCACACAGTTCTTTTGCAGGAGTCAAGATGTGCTCATAGGAGCCAAGGGCAAACTCGAAAACAGCCCTGCCCTGTGGTTAGGGGAGGTGGGTGTGGCTTTAGGAGTTGAGAGGGGAAGAGCTGAGTGCGGGCTGGAGCAGCGAGAATGCTTCACGGAGGATGTTGGGGAGAGAGGATTTGATTTGCCGAGTGGTTTGGAGATCTTTAGGGGCGGGTAGGGGAAGAGGGTGGCTGGACTTAAGGTAGGAGCCGAAAGTGGGCATGGGAGCCCATCCCCGTGGGTGTGAGGCCGGGGTAGGACCAGGCTTCCCGGCTAGGCACGCCTGGCTGGCTGCCTCTGCCTCTACTAACTTCCTTTGTCTCTTTATCCTCCTGCTTAGGCCGTGTCTTCCTCTCTCTCTGCCATTTTCTCTATCAGAAAACATTAAAGCTGAGTAGAAACTTCAAGATGATCATTCTGGCCCAGCCCTTTTATCTCTTTATCTCCAATGGTGTGCGTTTTAAGTTTCTCTGACTTGGTTTTTCTGTCCCTGTCTCCCACAGTTGTTCCCGCTCTGCACCTGTGTTTCAGTTACTCTCTCTCTCTGTCTTAGATCTTTTTGTTTCTGCCTAGTCTCTGTGCCCTGTCTTTGTGTGTTTCTTTCTCTGCCTGAAACCCTCCCTCTTTTCCCTTCAGGCATATGTCTCTAAACCAATGTTATGTATCAAAGACTGTTGAAAGAGACAGGGCTACTCTAGGAATGGATGGGTGGGGATATTTTCCCCATGGATCAAGATCCAGTTTAGGGTTGGGAAATAAAGGATAGGGATAAAAGAGGCACCCCATTCAGTCAGCAGATACTTATTCAGCACCTACTATGTGTTTGATACTGTATACAAAAGACATGAATGGGCTGGGTCCTGAACAGAGAATAAAGGGTTTGACTCCATTCTGGAAATTCTTTTGTTTGCAAACAGGTGTTGTTAATTTGTTCAAAGGCAGGCAAACAATCTCTCTGGCAACACAATTTTCTTCTGTATTTAATTAAAAAATATTAAAGCTTTTTTTCTATGATGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124602-UNC5CL:NM_173561:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.338
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(39.7=79.5)
A:
NA
C2:
PF0053117=Death=PD(59.0=61.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACAGCATCACCGGCAATG
R:
TAGGAGAACAACCCCTCTCGC
Band lengths:
348-2140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)