MmuINT0170620 @ mm9
Intron Retention
Gene
ENSMUSG00000043592 | Unc5cl
Description
unc-5 homolog C (C. elegans)-like [Source:MGI Symbol;Acc:MGI:1923839]
Coordinates
chr17:48604241-48608009:+
Coord C1 exon
chr17:48604241-48604354
Coord A exon
chr17:48604355-48606640
Coord C2 exon
chr17:48606641-48608009
Length
2286 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
3' ss Seq
CCCCTGTCCCGTGGAGACAGGTT
3' ss Score
2.5
Exon sequences
Seq C1 exon
GCTGCCCCCAGAGCTCTTTGAGCAGCTGCAGATGTTGTTGGAGCCCAACAGTGTCACTGGGAATGACTGGCGCAGACTGGCCTCCCACCTGGGTCTCTGTGGCATGAAAATCCG
Seq A exon
GTAAGCAACAGGCACATCTTTAGTGAAGTTCGAAGGTAGGCTGGGGTGGGGGGACTTCCCAACATCCTGGGAGCTGGACTAGGGACAAGGGGATGACTTGAAAGTTAGTGAACACCTACTGAGTCCCTCCAGAGTCCCTTTAGTATAGCTCTTTCTGCCGCTTCTACATCTTCAAGGTCCAGAGTGATGGTCACCAGACACACAGGTCTTTATACTGGCCACCTCTTTTATCTGTATTTCCGATGAAGTTGAAAAAACAGAAATTGATAAAAAGATTTAAGTCTGGTTTAGCCAAACTGGGGAGAGAAAGACTCGAATTTCTTACCACCATCTTACAATTTAGTCACAAGACAAAAACGAGAAGATAGGTAGACTCTCTTAGGGACTGGGTAAGGTGACTTGGTTCTAGGTTGCCCTTGGGGGTCTCAGTTCTCTACTGCAGAGACAGTTTTATTTTAATCATTATTCAAGTCCAGGGCTGAAGGAAACTGATGAACACTAAGATTGCAGTTTTTGTAAGAGTCTCTGGGATTGTTTGGGGCAGTGGTGTAAGAGGCTACCACCTGTATGTCTGAGCTTGACCAAGTTCCTTGTTCCCAGTTCATTCCTTGGATAGGGGAAGAGTGGACACTGTTTATACGTTGTATGTGGACGTCAGTTTCCAGCTCACACTCCTCTATGCCTATTCTATGAATTTTGAAAGTGAAAGAGAAAAAGTAGTGACAGCCTCACAGTTGAAGAGGAGGGTCCCAGGTGCCTCTGCAGAATTTAGAACACTTAGCTTTCTCTCCAAGACTTCAGACCCATTCTTTCAGCATGAGATCAGTTATATGATGTCTGTTGATAGTAAGTATGCAGTAAATATTTTACAAGGAATGAGACAAGCCACTGGTACTAGCTTGCCACACTGTGGCCCAAGGCACGGAAAAGAAGATTATAGGATGATGTGTATACAACATGTAGCTGATGTCGGTCTCGTAGTAGGTGTGCAATAAATATTTCACAAGGAACGATACAAGTCACTGGTACTAGCTTGCCACACTGTGGCCCACGGCACAGAAAAGAAGATTATAGGATACTGTGTGTACAGTGTGTAGCAGGAAGCCCGTCGCTTGTTAACACAGTAGGTGTTAGTAATCATGGTGGCAGTGCAGCTGGGGCTCCTGCCAAGGAGCTCACAAAGGGATCGGTAAAAGAGCCTTTCTGTGCTAGGCCCTAGAGTCCAGGCTGTGGATGCTGTCGTCAAGAGATGAGCTAGAGCCAGACCTTGGAAGCAGAAGAGATTTAAACACTTGTCAAGTGTCTGTCTATGTGCCTGGATCCAAAAGTGAAATAGGTTTTCACCTCCTAGGAGCACAAATGATCGATAACAAGGAACTCTGAGAACTTGAGAATAACAGCAAACATTCCTTGTGCCCCCCGCCCCCCCCCCCCCCCCGCCCCGGGTGTTCAGTATTGCAGAACACTGAAAAGAGAGATGCAAACAGTTGAAGAAGAAAAAAAATAACCAGAGGACGGCAGAATTGAGAGTAAGACAGGATGCCAGAGAGGAAACCATAGAGGATGCTCTAGCTGCGGGGAGCAGCAGAGGTGCTGAGTGGGGGGCAGAATATGCAAGCTAGGTTAGAGGTGGGAGGAGGCGAGGGCAGGTCAGAAAGGCAGGGCATCACCAGGTGGTGGGTGAAGGAGGCAGGCAGGAGTAGACTGGCTGCTAAGTAAAAGGGACTCTGAAAGGCTCGCAAACAATGGAGGGTCGTCAAGGGAACTATGAGCGTGATCCAACACAAAATCATAAGCATACTTAAAGCATGAGGTTTTTTTGTTTTTGTTTTTAATGTTCATGGTTCTCGAGTGTGAGTTTGTAGCTAACACCTGTCTCCGTTTGCTTTCTATTGCGGTGATAAAGCACCATGACGCAAAGCAACATGGGAAGGAAATGGTTTATTTGCTTATCATTGGCGGCAGTCCATTTTGAAGGAAAATCAAGGAAAGGGCTCAAGGGAGGAATCTAGGGGGCGGGAACTGATGCAGAGGCCATGGAGGGGTGCTGCTAATTCCCTTGCTCTCCGTGACTTGCTCAAGCCTGCTTTAGTCTACCACTCAAGCTGACTTAAGAAGAGCGGAGCGCAGGCTCCTCTCAGCTTGCAAAGTCCCACCCTTCCGGGGAGGTAGACAAGGCTAGCGGGAGCAGAGCTCAGGGGTGGGGCGCAGAGGTACAGAGTGTGTCTCATACTGCTCTTGAGCGCTCTGCTCTCCTCTCACCACGCCCCTGTCCCGTGGAGACAG
Seq C2 exon
GTTCTTGTCCTGCCAGCGCAGTCCCGCCGCGGCCATTCTGGAATTGTTCGAGGAACAGAATGGCAGCTTGCAGGAGCTGCACTATCTCATGACCTCCATGGAGCGGCTGGACTGCGCCTCTGCCATCCAGAACTACCTAAACCGGTCTCCCCGGGGCAGCCCTGACAGGTTGCATGGAGGCACCTGGGAGAACCATGGCCTAGAGCTGGATGAGAAACTCTAAGCAGACTCCACGGCTGTGCAGGGTGCTTCAAGAGGCCATGCCATACCGTGCCATGCCTTTGAGCTCAGGATCAATGCCACAGTCTCAGGTGGACCGAACTGGAACCCGCAGCAAAGCCCGACAGCCCTGTCATCTGCCCTGCATCAGGATAGCTCTTAATCCTGCCGGCCAACTTTGTCCTGCGTGCAGATTCCTTCTTGGTCGGTAGGGGGCGCGGGAGTCTGGGAGATGGTCACAGCCAAGCAGCTTCTGAGATGCTGCTTAATTTTCTTGTGGACCTGTGGGCAGACCTCAGAGACTGCTCAGTCCACAAATATTCATGGAGCGCCGAGTCTCAGCACCAAGCTGGGATCATGAGGAACGTCGGCTTCTTTGGACTTGTCTTGGAGTCTGTTCTGCGAAATGAAGATGCACTCCCAGCCGGCTGAGAGCAACATTCTAGACAGTGTCTCCCTGTGGTTAGGAGATGTCTTGGGTGTGTAACTTTGTTGAGAAGGGAGGGCCCTGCGGTGGACTGGAACAAAGAGAAGTCTCTATAGAGGGTCTTGGGAGAGAACTTTGGCGGGGGAGGGGGCTCACCTCATTGATGTGAGGAATGGCCTCTTCTCCCTTCATCTCTTCACTTGCAGCTCACACTTTGTCCTCCTCCTCAGCCTTGTTTCTCTCATCACACAGGAAGCTGTGAAGCCTCAGGATGCGCGCCCTATGTCTCTCCACCTCCAGCTGAGAGTGTTAAGTTTCTGGCTGCCTTTTCTTGCACTTGCCCAGCTCAGAGTTGGCCTCTTTACTGTTGCTCATGTCTTCACATTGCTTCGTCTCTATCTAGTTATGGAATCCCATCTTTGTGTTTCTTTTTCTATTAGGAAAAAAAAAATCAGTCACTCCCTCAGGCAAGTGTCTGAGCTAATGCTATGTATTTCAAGGCTACTGAAAGAGCTTCGGCTATTCCAGGAATGAATAAGTAGAGACATTTCTCTCACAGATCAAGTTCCTCCTTAGGGGCAGGATTAAAGGACCCCCACCCCGCTCCGATCCAGTCAGCAGTTCTGGCTACTGCTACTCTTGCTTACCGATAGTTTTGTTCGTTTGTCCAAAGGTATACAATCCCTTTGGAGATAATAAAATTTCACTTGCACATTTAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043592-Unc5cl:NM_152823:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=NA C2=0.176
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(39.7=79.5)
A:
NA
C2:
PF0053117=Death=PD(59.0=61.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: