BtaINT0157883 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008428 | UPP1
Description
uridine phosphorylase 1 [Source:HGNC Symbol;Acc:HGNC:12576]
Coordinates
chr4:7533969-7540901:-
Coord C1 exon
chr4:7540837-7540901
Coord A exon
chr4:7534084-7540836
Coord C2 exon
chr4:7533969-7534083
Length
6753 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TCCTTTCCTGTTTTGGGCAGTGA
3' ss Score
7.1
Exon sequences
Seq C1 exon
GGTCCTGCCTCAGCTGAGGGAATGGCCTCCACCGCGGCTGAAACGGAGAAGCCGGAAGATCACAA
Seq A exon
GTAAGGTGACCTGCGTGCTGCCTGGCCTAGGCTGGTGGGGATGACCTCGAGCCCACAGGAGCTGAGGCGTGTGGACACTTTGGTTCTTGGGTCTGAGGCCGAGCGGGGTCTGGGGGACTGAACGCTGGGTTGGCTGGCAGCTGAGCTGGCTGAGAACGCCTGGCACCTGGTGCCGGGCACAGCTTGTAGCCTTGGAGTGTTTGTCCCTCAAGGATTCAAGTGCTCAGACCTGTATCCAGTGGGGTTTCCTTACTCCTGGGCACTCTTTGTTTTGTTTTTTGGTGAGCTAAATTTTATCTGGGGCAAAAAGAGGACCGCAGCCTGGAAGGCAGCCTCAGATAGCTCTGAGAGGCCACTCCAAAGACGCCGTTGGGGAAGGTCAATACATAAGATTTCGGGGAAGGGGGAGCTCAATGCAATCCAATGATTACTTTATAAGAAGCTTTCTCCTCTTGGACACTTTCTGAGTCACAGTCCCTGCTGCCCTCCCAGCTCTCTTGGTTCTGACTTTCAAACACTTTCCTTATTTCTTTCCAGTTGTTCATTATCCACTGTATGAATCACATGGCCACTCTTTTATGTATATTAGTGCATTGCTGGTACTGATGAAAAAAAATTAATAGTCAATATGAGAAAAAAAAGGAAAATTATATTCCAGTTAGCCTGAGAATTATAACCCAGGAGATGGCTTTTCAAAAAGCTCTAAGGACTGTTTTGCCCAAAAGAGGTCAACGGTTTTGAGACAAAGTGTAGTAACATCAAAGGGTGTATTACTGGGGCTCCTCAGGTGGTGCTTGTGGTAAAGAATCCACCTGCCAGTGCAGGAGATGTCCGAAACGGGTTCAATCTCTGGGTCGGGAAGATCCCCTGGAGAAGGGCATGGCAACCTCCTCTGGTACTCTTGCCTGGAGAATCCCATGGTCAGAGGAGTCTGGCAGGCTATAGTCCATAGGGTCACAAAGAGTCACGACTGAAGAGACTTAGCATGCCTGCATGCACGCACACACGACATATTACTGACAGTTTACACAATCCAGATACACGTCCACAGAGCAGTGAGTCATGGGTTGTCATGACCCCTCACAAGATTAAGGAGGAAGATGACAGCTAAAAAATTTATGGCGTTTTGATTCCACTTGTTTGACTTAGTATGAATAGAATGCTAGATTTGTAATTTATGTATCAATGGCACCCCACTCCAATAATCTTGCCTGGAAAACCCCATGGACAGAGGAGCCTGTTGGGCTGCAGTCCATGGGGTCGCTAAGAGTCGGACATGACTGAGCGACTTCACTTTCACTTTTCACTTCCATGCACTGGAGAAGGAAATGGCAACCCACTCTGGTGTTCTTGCCTAGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCCGCCATCTATGGGGTCGCACAGAGTTGCACAGACACGACTGAAGTGACTTAGCAGCAGCAGCATTCACTCAAAACTTTGATATAGTTCCATGTATTTTGGCATCGGTATTACTGCTAAATGTCTAGAAAGTTTGTTACCTTGGTGATTTAAAAAAAATTTAAATGAAGCTTGAAAGTTCTAATTCAATTTTGAGAATATGAAGAAATACTATGTTATAAAAAAATATCTAGGAAATGTGTTATACAGTATTGTTAACTAAAGTAGAGATTTTGTTTAAATCTAACAAAATTTTATGCTAGTGTCCATTGTTTTCATCCCTTATTCAAGATTCATGTGTTCAGTTGCACTGAGCAGCTTCAGCTGCATGCAACAAATTCTGGTAAATTCTCTTTTCATTTTTATTCTGTTACAAATATTTTCTAATTTTCCTTTTTATAGTTTCTTAGATACACACATCATTTAAAATGGACATTTAATTTCCAAATACATGGGATTTTTAAAGTATCTTTGCTATTAATTTCTCATTAAATGCTTTCTTCTCTGCAATCAGCCCCTGTGTTTCTTTAGTCTCCTAACTTTATTGAGACTTCCAATGGCTAAGTCAAAGATCTCTGTCGGTAAATGTCACATTGCACTTGAAAATGTGGGTTATTTTGAAATATCTTTTGATACTAATTTCTAACATAATTCCACAGTAATAAGAGAACAGACTCTGTATGATTTCAATACTTTTAGACCTAAAGGCCATCCAGTAAGAGAGGAGAAACCCACCAAGTTAACCTAGGAGTACTGGACAGAGGTAATTGGCCACGAACTCAGCAATTAGTTTGACTTTTGAAACTTAAAAATGACTGAGCCCAAGGAAGAAATACTTCTGGTTTATAAGCAAAAGTGTGAGCAATTATTAAAGTAATTAGCTTACAGGCCTGGTCTGGCATCTTGGATCAGATGTCTACTTCAGATATCATAATTTTCTTGCCCTGGTCTGGCAGTATTAATCTTAATCAAAGTCTAAGGAAGCCTAATAGAGTCCCTTCCAAAAGTCCTTTATCTGATGTCTTTCCCACATGTATAATCCCCTGGTTGCAGGCCATGGTACATGTGGTCTTCGTTCAAAGATAGATTACTGTAATAAGCTTCAGAAACAAACTATACCATAATGTAGCACAGCAACAAGGAGTCATCTGAGAAATGCATCCTAGGCAGTAAATACAGACCTCAATTAGTAATTATTAATTAATTTTATTACCTGATAAAGCTGATGAGAAGGGAAGAGTTTCCAATTTCTGGAGAGATCAGGTAGAAAAGATAACTGTCTGAATTGTACTTACTAACGTGTAATTTACCAAATTTCTGTAATTAGCTTGAGGGGAAGAGTTTCCCTGTGTCTGGAAAACAGGTCCAGTGGTTAGAACTCTGAGCCTCCAGTGAAGGGGTCACGTGTTCAATCCCTGGTTGGGAAACTAAGGTCCCATAAGCTGCTGAGCAAGGCAAAAAACAAAATGAGCAACTCCCCCCATCAAAAAAGTAAATAAATAAAAACCACCGACCAGGAAGTGAATCCAAGTCCTGGTAGTGAAGGTGCCAAGTCCCAACCACTGGACTGCTAGGGAACCAGAAAGTTCTTGCTATGGAATCTTTTTGAAGATGAAGCTGTCTATAAATGACAAATGACTTAAAAAGGCAAGGTTAAAGGTCTGATTACATTGTATTTGGTAAAGAAACTTGGCTATTTCTGTGACATACAAAATTTTAACATAATAACTACAATTATGATTGTAAACATTATCAGGATGTACGAGATTCTAAGGAGTGGCATATAATTTCTAGAACATGTATATTAGTAATACTTAACCCACACAATGTAACCTAAGATTATTTACCACGACAATGCTGCCCCATGTAATTTAACATACCAAATAAGCCTCATGAGTTTAATTTTACTCTCTCTGAGATGCTTCAGGGGTCCTTTCTGAAGAATCCCAAAGTCAACTTCAGGGAGAATTTGGGAAGTCTGTCAAAATAGTAAAAAAGTTTTAAAACACTTGGTCAAATAGGACCTTAGGTCACTGTGGAACAATACTTAATTCACTTAACCAAAGTGAGAGCACAATCTTTCAAAAGCAAATACAGCTCACCTGAAAGGCAAAGACGTACAATCCAGTAGGGAAAACGGCTCAATATTCCAAGAGAACTTTATTTTTTAAACATTAAAAAAAATACGTATTCATTTTTCACTTATTTAACTGCATTGCATCTTAGTTGTGGCATGTTGGGAGCTAGTTCCCTGACCAGTGATCGAACCTGGACCCCCTACATTGGGAGCATAGCGTCTTAGCCACAGGACCACCAGGAACGTCCCTCCAAGAAAACTTTATTCTCTTAGCACAGAGAGAAAACCAAGCTTCAGTTTCATATCAATTACTCTTAGTAACAAAATATACTTAATTGAATTCAGTCCTACCTCACTATACATAAAACTCTTTTCTCAGGATTCCCTTCTAAGAAGGGCTCCTTGGTTCTCTTCTTGGAGGTTCCTCAGGAGGTCCTCTGGAGCCTCACACAGGTTGGTCACCTGCTCACGTCCTAATCCCACATGGACACCTGCCCTTTCCTTCCTTCCCTGCAGAGTCTTTGGCCCATTTTCAATTTTGGGGGCTGCCCCGGGAATGGCACTTGCAGAGATAACTTTACTTGAAATAGTAGGGTCCTGAGTGCTTCCTATCATTGACAGCCAAACACACCCTGTCCCCACTGTCCTCTCCCTGACCTCTGCCCCCAAGTTGAGGACCCTGGGGGCTGATGGAGTGGGGATACTGTGAAATAAAGGCTGGAGAAGGGGACCTGGGCACCAGGTGAGGTGCAGTGACCCCTCCTTTGGTTTCAGAGTCCCTTCCTCATCTGCCAGCCCCTTTTTTAGAAAATGTTTATTTGTATTTATTTGGCTGTGCTGAATCTTAGTTGCAGCACGTGAGATCTGTCTTAGTTGGCACATGCAGGATCTCATTACCTGACCAGGGATTGAAGCCCAGGCCCTCTGCATTGGGAGCATGGAGTCTTAGCCACTTGTTCACCAGGGAAGTCTCTCTGCCTGTTTCTTGAGCATGCGACCCTAGACATCTGGGCCAGTTTGTCCAATAGCCATGTTTTTCCCTCCCTGCTGATAAACCCCTGGAATCATAAGTCAGGTTTCATTCCTTTTGCATGCCACCCATTTCTTTTACAGAGTAGGTGCTCAACGAATATTTGTTAAATAAAGTGACAGAATAAAGGAAGATACAGTCAAGTTTGAAACTGTGTGTAGGCTAGAGGAACAGTTTTCCATTAATATGTCTTTTACTTGTTATTTTTAAATCCTTTTTAAAAATGGAGTATAATCTTTAAAAAATTGAATCACTATGGTAGACCTGACTCTATTACAACACTGCGGGTCAATTAAGCCTCAGTAACAAAAGTAAGTCTGGGCTTGTTCTGTTTGCTATTATGTCTCCAGAATTACACCCTATTTCCTTCTCTTCCTGGAATGAAAGAGGAAAGAAAGCTTTTGTATTTTGAAATAAGTGACAAAGTTGTTTGGTCACATCCTGTTTTGTCAGTTCCGATGCTTGCCTAGTAACGCTTCTGTTTGTAGTCTGTCTTGTGAACATCCTGAAGGAGGCCAAGAACCATAATTGTAGTAAAACAATTACCTTTAAAGGAGCTTCAGATGCTGTGATTGTGTTGCGACTTCAGAATTTCAGCTTGGCCTGGAGATTCAGAAGGCATTCAGGGAAAGCTTGGGATTTGTCCCCGCTGGATTTGGTCCCCTGGAAAAAGACCCCCTGCCCCAGGAGGGTGGGCTTGGCTGGGACTGGTTGGGGTCCAGCACAGACTGTGGCTTGGGCAGGTGGCCTCTTCTGAGTAAGACTCTCCCATCTCTGCCCCAGGGCCGTCCCGTGAGCCAGCCATCAGCACCTCCCCTTTAGAAAAAGATCTGTCTCTCTTTAATATTTTGTTTGCGTCTTAAAAATTTTTTTTTAATTTTTTTCACTTGATGATAATTTTTATTGACATGTCTTAACACAAAAAATAATGCATTTGCATTGCAGAAAAATGTTTACCTCTTTTTGTATTGCTTCTCGACACTGTTGGGCTGTGAATTAACTTGGATGCCATTCTAAGGAAATAGGAGGGAAATGTGAGAAGGGAAAGGAAGAAGTGATGAGATGCAGAAAACAGAGGAGCAAACACCTTTGGTCTAGAGCCTGGTCTAGAGCGAGGACCAGTGGATGCCAGGAAAACAGGGGCTAGAGACAGCAGAGGAGGTGGCCTGGGTCAGTCGCATTGTTGTGTTTACAAATCCCAGGATGCTTAGACCTTCTCCTGGATGTTTTTTTCTCACAGTTAGATTGAGAAGGAAATGTGATCAGTGGGTTCTGAGCAGAAAGTCTGACTCAGAAGGAAGAAATAGAAGGTCCTAACTGCTGTGAACTGGGGCCCCGTGCTGCCTCCCTCTTTGCCCCTGGCACTGGGCAGCACACTTGTGTTTGGGATCTGGAAGGCACAGGTGTAGAAGGAGGTGTGTCTAAGGCTGCAGATGCAATCTAGACCTCGGCATCATGTTTATAAAAATAAAGTTTTATTGGAACACATCCATACCCATCTGCATGTTGTCTGTGGCCACTTTGATGTGACAACAGCAGGGTTGAGAAGAGGCGATGGAGCCCATATGACCTTCAGGGGAAAAAATATTTACCATTTGGTCTTTTTTGGGAAATGTTTGCTGACCCCTACTGCCAGCTAGCAGTGTACCGTCCAAGAGAAATACAATGCAAACCACACAAAGTTTCAAGCAGCTGCAGAGAAAAAAACAAAATGAAAAGATGTCTTTTCTCATCACTCTCTTTTGATGGTTGTACCAGCTAAGTGCTGGCTAATGGCAAGGAAAGGAAAAGGAAAGGCGTCAGATTGGAAAAGCCATCTCTGAGTGGGAGGATTATAGGCCATTTTTTTACTTTTATTTCCATGCATATTTCCTGTGATAAGTATATTATTTTTAACACAAAGCCACATTTACATGTTGAGTGAGCTTGAGTTGGGTAGCAACTGGCTACACTCTTTATAGAGTGAATTGGCATTTTGAGCTTTGTATACCATTCGGTGCTCTTGTGAGTTCTGTCTGATCACCCTCCAAAACCAGCCCTGGAAGTGAAGAGGGGGTGAAGGGGAGGAGTGGGGGGAACTCAGATGGAGCAGAAGCCTCTGTAGGTTGGGGTTGTCCCGCTGCTGGGTTCCACGTGCCTCTCTGGCACAGAGCGCCTCAGTGGTCCAGTTGGCCACTGGACGCTGGTGCTGTAAACTGTCTCCTTTCCTGTTTTGGGCAG
Seq C2 exon
TGACTTGGTGCAGCTTTGCAATCCCCACATAGCAGCAATGAAGGAAGACATCCTCTACCACTTCAGCCTCAGCACTAGCACGCACGATTTCCCAGCCATGTTTGGAGATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008428:ENSBTAT00000011088:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]